Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19635 and PS417_19645 are separated by 565 nucleotides PS417_19645 and PS417_19650 are separated by 0 nucleotides PS417_19650 and PS417_19655 are separated by 81 nucleotides
PS417_19635: PS417_19635 - lipid kinase, at 4,269,758 to 4,270,678
_19635
PS417_19645: PS417_19645 - chemotaxis protein, at 4,271,244 to 4,271,636
_19645
PS417_19650: PS417_19650 - chemotaxis protein CheW, at 4,271,637 to 4,272,119
_19650
PS417_19655: PS417_19655 - chemotaxis protein CheW, at 4,272,201 to 4,272,989
_19655
Position (kb) 4271
4272 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4270.244 kb on - strand, within PS417_19635 at 4270.510 kb on - strand, within PS417_19635 at 4270.619 kb on + strand at 4270.619 kb on + strand at 4270.619 kb on + strand at 4270.619 kb on + strand at 4270.620 kb on - strand at 4270.620 kb on - strand at 4270.688 kb on - strand at 4270.775 kb on + strand at 4270.775 kb on + strand at 4270.775 kb on + strand at 4270.805 kb on + strand at 4270.806 kb on - strand at 4270.851 kb on + strand at 4270.924 kb on + strand at 4270.925 kb on - strand at 4270.928 kb on + strand at 4270.929 kb on - strand at 4270.929 kb on - strand at 4270.929 kb on - strand at 4270.935 kb on + strand at 4270.937 kb on + strand at 4270.937 kb on + strand at 4270.937 kb on + strand at 4270.938 kb on - strand at 4270.946 kb on + strand at 4270.947 kb on - strand at 4270.997 kb on + strand at 4270.998 kb on - strand at 4271.107 kb on - strand at 4271.227 kb on - strand at 4271.234 kb on - strand at 4271.234 kb on - strand at 4271.237 kb on + strand at 4271.237 kb on + strand at 4271.237 kb on + strand at 4271.253 kb on - strand at 4271.566 kb on + strand, within PS417_19645 at 4271.566 kb on + strand, within PS417_19645 at 4271.566 kb on + strand, within PS417_19645 at 4271.965 kb on + strand, within PS417_19650 at 4271.965 kb on + strand, within PS417_19650 at 4271.966 kb on - strand, within PS417_19650 at 4272.040 kb on + strand, within PS417_19650 at 4272.040 kb on + strand, within PS417_19650 at 4272.040 kb on + strand, within PS417_19650 at 4272.066 kb on - strand, within PS417_19650 at 4272.120 kb on - strand at 4272.146 kb on + strand at 4272.147 kb on - strand at 4272.159 kb on + strand at 4272.159 kb on + strand at 4272.160 kb on - strand at 4272.166 kb on - strand at 4272.287 kb on + strand, within PS417_19655 at 4272.287 kb on + strand, within PS417_19655 at 4272.288 kb on - strand, within PS417_19655 at 4272.288 kb on - strand, within PS417_19655 at 4272.288 kb on - strand, within PS417_19655 at 4272.583 kb on + strand, within PS417_19655
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 4,270,244 - PS417_19635 0.53 -0.4 4,270,510 - PS417_19635 0.82 -0.2 4,270,619 + +1.0 4,270,619 + +0.2 4,270,619 + -0.4 4,270,619 + -0.0 4,270,620 - -0.3 4,270,620 - -0.4 4,270,688 - +1.0 4,270,775 + -0.2 4,270,775 + +0.1 4,270,775 + -0.9 4,270,805 + -0.7 4,270,806 - +0.4 4,270,851 + -0.1 4,270,924 + -0.0 4,270,925 - +0.2 4,270,928 + -2.2 4,270,929 - -0.8 4,270,929 - +0.5 4,270,929 - -0.2 4,270,935 + -0.7 4,270,937 + +0.6 4,270,937 + +0.4 4,270,937 + +1.0 4,270,938 - -0.0 4,270,946 + +0.6 4,270,947 - -0.1 4,270,997 + -0.0 4,270,998 - -0.4 4,271,107 - +0.3 4,271,227 - +0.4 4,271,234 - -1.4 4,271,234 - +0.5 4,271,237 + -0.5 4,271,237 + -0.5 4,271,237 + -0.2 4,271,253 - -0.4 4,271,566 + PS417_19645 0.82 -0.7 4,271,566 + PS417_19645 0.82 -3.8 4,271,566 + PS417_19645 0.82 +0.4 4,271,965 + PS417_19650 0.68 -0.6 4,271,965 + PS417_19650 0.68 +1.0 4,271,966 - PS417_19650 0.68 -0.4 4,272,040 + PS417_19650 0.83 +0.1 4,272,040 + PS417_19650 0.83 -0.0 4,272,040 + PS417_19650 0.83 -0.5 4,272,066 - PS417_19650 0.89 -1.0 4,272,120 - +0.0 4,272,146 + -0.4 4,272,147 - -1.4 4,272,159 + -1.6 4,272,159 + +0.4 4,272,160 - -0.4 4,272,166 - +0.1 4,272,287 + PS417_19655 0.11 -0.8 4,272,287 + PS417_19655 0.11 +0.6 4,272,288 - PS417_19655 0.11 -0.3 4,272,288 - PS417_19655 0.11 +0.2 4,272,288 - PS417_19655 0.11 +0.7 4,272,583 + PS417_19655 0.48 -0.8
Or see this region's nucleotide sequence