Strain Fitness in Pseudomonas simiae WCS417 around PS417_19545

Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
4,238,521	+		PS417_19540	0.69	+0.3
4,238,522	-		PS417_19540	0.69	-0.8
4,238,704	+		PS417_19540	0.76	-0.4
4,238,705	-		PS417_19540	0.76	+0.1
4,238,739	+		PS417_19540	0.77	+0.4
4,238,739	+		PS417_19540	0.77	+0.7
4,238,740	-		PS417_19540	0.77	+0.0
4,238,741	+				-1.4
4,238,742	-		PS417_19540	0.78	-0.6
4,238,748	-		PS417_19540	0.78	+0.5
4,238,804	+		PS417_19540	0.80	-0.4
4,238,882	+				+2.0
4,238,882	+		PS417_19540	0.83	-0.4
4,238,882	+		PS417_19540	0.83	+1.0
4,238,883	-		PS417_19540	0.83	-1.4
4,238,883	-		PS417_19540	0.83	+0.8
4,238,887	-		PS417_19540	0.83	-0.3
4,238,895	+		PS417_19540	0.83	+2.5
4,238,917	+		PS417_19540	0.84	+0.5
4,238,917	+		PS417_19540	0.84	-0.3
4,238,918	-		PS417_19540	0.84	-0.7
4,238,918	-		PS417_19540	0.84	-0.5
4,238,921	+		PS417_19540	0.84	-0.7
4,238,921	+		PS417_19540	0.84	-2.6
4,238,922	-		PS417_19540	0.84	-0.5
4,238,922	-		PS417_19540	0.84	-0.1
4,238,954	+		PS417_19540	0.85	+0.0
4,238,954	+		PS417_19540	0.85	-0.3
4,239,057	-		PS417_19540	0.89	+0.7
4,239,073	+		PS417_19540	0.90	+0.1
4,239,121	+				-0.1
4,239,122	-				-0.3
4,239,231	+				-0.6
4,239,250	+				+0.5
4,239,476	-				-1.6
4,239,543	+				-0.2
4,239,543	+				-2.9
4,239,544	-				-0.2
4,239,586	+				+0.9
4,239,587	-				-0.6
4,239,587	-				-0.6
4,239,773	+				+0.6
4,239,916	+				-0.0
4,239,916	+				+0.1
4,239,916	+				-1.8
4,240,147	+				-0.3
4,240,148	-				+0.7
4,240,351	+				-0.0
4,240,391	-				+0.0
4,240,423	+				+2.5
4,240,424	-				+0.9
4,240,739	+				+0.5
4,240,739	+				-0.3
4,240,878	-		PS417_19545	0.11	+0.1
4,240,879	+		PS417_19545	0.11	-0.6
4,240,880	-		PS417_19545	0.11	+0.1
4,240,880	-		PS417_19545	0.11	+0.5
4,240,880	-		PS417_19545	0.11	+0.6
4,240,880	-		PS417_19545	0.11	-0.1
4,240,888	+		PS417_19545	0.11	+0.3
4,240,889	-		PS417_19545	0.11	-0.7
4,240,912	+		PS417_19545	0.11	-0.6
4,240,913	-		PS417_19545	0.11	+0.5
4,241,242	+		PS417_19545	0.14	+0.1
4,241,242	+		PS417_19545	0.14	-1.3
4,241,243	-		PS417_19545	0.14	-0.3
4,241,321	-		PS417_19545	0.14	-0.5
4,241,321	-				-0.6
4,241,321	-		PS417_19545	0.14	+1.1
4,241,497	+		PS417_19545	0.15	+0.9
4,241,497	+		PS417_19545	0.15	+0.6
4,241,509	+		PS417_19545	0.16	-0.3
4,241,509	+		PS417_19545	0.16	+0.7
4,241,509	+		PS417_19545	0.16	-0.5
4,241,726	-		PS417_19545	0.17	+3.0
4,241,747	+		PS417_19545	0.17	-1.2
4,241,747	+				+1.0
4,241,747	+		PS417_19545	0.17	-0.7
4,241,748	-		PS417_19545	0.17	-0.9
4,242,038	-		PS417_19545	0.20	-0.6
4,242,038	-		PS417_19545	0.20	-0.3
4,242,038	-		PS417_19545	0.20	-1.5
4,242,038	-		PS417_19545	0.20	+0.9
4,242,254	-		PS417_19545	0.21	-0.4
4,242,254	-		PS417_19545	0.21	+0.3
4,242,643	+		PS417_19545	0.24	-0.0
4,242,643	+		PS417_19545	0.24	-4.2
4,242,644	-		PS417_19545	0.24	-0.4
4,242,644	-		PS417_19545	0.24	+0.2
4,242,644	-		PS417_19545	0.24	+0.4
4,242,646	+		PS417_19545	0.24	+0.1
4,242,682	-		PS417_19545	0.25	-0.1
4,242,682	-		PS417_19545	0.25	-0.2
4,242,797	+		PS417_19545	0.26	-0.2
4,242,797	+		PS417_19545	0.26	+0.0
4,242,798	-		PS417_19545	0.26	-0.5
4,242,856	+		PS417_19545	0.26	+0.2
4,242,937	+		PS417_19545	0.27	+0.4
4,242,937	+		PS417_19545	0.27	+2.0
4,242,938	-		PS417_19545	0.27	-0.9
4,242,938	-		PS417_19545	0.27	-0.2
4,242,938	-		PS417_19545	0.27	-0.1
4,243,063	+		PS417_19545	0.28	-0.7
4,243,064	-		PS417_19545	0.28	+0.7
4,243,130	-		PS417_19545	0.28	+0.4
4,243,582	+		PS417_19545	0.32	-0.6
4,243,692	+		PS417_19545	0.33	-0.2
4,243,693	-		PS417_19545	0.33	+3.0
4,244,280	-		PS417_19545	0.37	-0.5
4,244,366	-		PS417_19545	0.38	+1.5
4,244,366	-		PS417_19545	0.38	-0.4
4,244,366	-		PS417_19545	0.38	+0.1
4,244,476	+		PS417_19545	0.39	-0.9
4,244,476	+		PS417_19545	0.39	+0.2
4,244,476	+		PS417_19545	0.39	-0.3
4,244,476	+		PS417_19545	0.39	+0.1
4,244,551	+		PS417_19545	0.39	-0.8
4,244,552	-		PS417_19545	0.39	-0.8
4,244,552	-		PS417_19545	0.39	-0.1
4,244,698	+		PS417_19545	0.40	-0.4
4,244,819	-		PS417_19545	0.41	+0.4
4,244,848	+		PS417_19545	0.42	+0.4
4,244,848	+		PS417_19545	0.42	+1.1
4,244,848	+		PS417_19545	0.42	-0.1
4,244,848	+		PS417_19545	0.42	-2.0
4,244,849	-		PS417_19545	0.42	-0.2
4,244,849	-		PS417_19545	0.42	+1.0
4,244,850	+		PS417_19545	0.42	+0.5
4,244,851	-		PS417_19545	0.42	-0.2
4,244,900	+				+1.0
4,244,900	+		PS417_19545	0.42	-1.4
4,244,902	+		PS417_19545	0.42	+0.2
4,244,902	+		PS417_19545	0.42	+0.2
4,244,903	-		PS417_19545	0.42	-0.2
4,244,903	-		PS417_19545	0.42	-1.4
4,244,995	-				+1.0
4,245,101	+		PS417_19545	0.43	-0.2
4,245,102	-		PS417_19545	0.43	+2.5
4,245,102	-		PS417_19545	0.43	-0.4
4,245,437	-		PS417_19545	0.46	+1.0
4,245,437	-				+1.0
4,245,445	+		PS417_19545	0.46	+1.4
4,245,445	+		PS417_19545	0.46	+1.7
4,245,446	-		PS417_19545	0.46	-0.2
4,245,470	+		PS417_19545	0.46	-0.2
4,245,493	+		PS417_19545	0.47	-0.2
4,245,494	-		PS417_19545	0.47	-0.0
4,245,550	-		PS417_19545	0.47	+0.2
4,245,619	+		PS417_19545	0.47	+0.1
4,245,620	-		PS417_19545	0.48	-0.7
4,245,620	-		PS417_19545	0.48	+1.3
4,245,620	-		PS417_19545	0.48	-0.2
4,245,661	+		PS417_19545	0.48	+0.0
4,245,661	+		PS417_19545	0.48	-0.8
4,245,661	+		PS417_19545	0.48	-1.5
4,245,661	+		PS417_19545	0.48	-0.5
4,245,661	+		PS417_19545	0.48	-0.9
4,246,075	+		PS417_19545	0.51	-0.2
4,246,075	+		PS417_19545	0.51	+0.7
4,246,076	-		PS417_19545	0.51	-0.6
4,246,162	+		PS417_19545	0.52	+1.0
4,246,163	-		PS417_19545	0.52	-0.1
4,246,163	-		PS417_19545	0.52	-1.3
4,246,485	-		PS417_19545	0.54	-1.5
4,246,486	+		PS417_19545	0.54	+0.1
4,246,601	-		PS417_19545	0.55	-1.4
4,246,759	+		PS417_19545	0.56	-0.6
4,246,760	-		PS417_19545	0.56	+1.5
4,246,813	+		PS417_19545	0.57	-0.2
4,246,813	+		PS417_19545	0.57	-0.0
4,246,891	+		PS417_19545	0.57	+2.0
4,246,891	+		PS417_19545	0.57	+0.4
4,246,892	-		PS417_19545	0.57	+1.0
4,246,892	-		PS417_19545	0.57	-0.4
4,246,892	-				+1.0
4,247,075	-		PS417_19545	0.59	+0.1
4,247,258	-				-1.4
4,247,665	+		PS417_19545	0.63	-0.7
4,247,666	-		PS417_19545	0.63	-0.0
4,247,666	-		PS417_19545	0.63	+0.0
4,247,734	+		PS417_19545	0.64	+0.6
4,247,735	-		PS417_19545	0.64	-0.6
4,248,400	-		PS417_19545	0.69	+0.9
4,248,589	+		PS417_19545	0.71	+0.3
4,248,589	+		PS417_19545	0.71	+0.5
4,248,590	-		PS417_19545	0.71	+1.7
4,248,599	-		PS417_19545	0.71	-0.0
4,248,763	+		PS417_19545	0.72	+0.7
4,248,764	-		PS417_19545	0.72	-0.0
4,248,806	-		PS417_19545	0.72	-0.0
4,248,913	+		PS417_19545	0.73	+0.1
4,248,913	+		PS417_19545	0.73	+0.7
4,249,058	-		PS417_19545	0.74	-0.2
4,249,144	+				-1.0
4,249,144	+		PS417_19545	0.75	+1.7
4,249,145	-		PS417_19545	0.75	-0.5
4,249,601	-		PS417_19545	0.78	-0.0
4,249,874	-				-1.4
4,249,927	+		PS417_19545	0.81	-0.3
4,250,209	+		PS417_19545	0.83	+1.6
4,250,220	-		PS417_19545	0.83	+0.3
4,250,261	+		PS417_19545	0.84	+0.3
4,250,318	-		PS417_19545	0.84	-1.0
4,250,504	+		PS417_19545	0.85	-1.0
4,250,504	+				+3.0
4,250,708	-		PS417_19545	0.87	-0.2
4,250,708	-		PS417_19545	0.87	+0.1
4,250,708	-		PS417_19545	0.87	-0.6
4,251,070	+		PS417_19545	0.90	-1.0
4,251,070	+		PS417_19545	0.90	+0.3
4,251,070	+		PS417_19545	0.90	+1.0
4,251,070	+		PS417_19545	0.90	+0.5
4,251,070	+		PS417_19545	0.90	+0.4
4,251,071	-		PS417_19545	0.90	+0.5
4,251,071	-		PS417_19545	0.90	-0.8
4,251,119	+				+2.0
4,251,120	-				-0.7
4,251,670	+				+0.7
4,251,887	-				-0.1
4,251,887	-				+2.0
4,251,887	-				-0.1
4,252,154	-				-0.3
4,252,535	+		PS417_19550	0.13	-1.9
4,252,535	+		PS417_19550	0.13	+0.1
4,252,536	-		PS417_19550	0.13	-0.0
4,252,830	+		PS417_19550	0.52	+0.7
4,252,831	-		PS417_19550	0.52	+1.3
4,252,968	+		PS417_19550	0.71	+0.3
4,253,084	+		PS417_19550	0.86	+1.2
4,253,084	+		PS417_19550	0.86	+0.3
4,253,219	+				+0.8
4,253,219	+				+0.5
4,253,219	+				-1.0
4,253,220	-				-0.4
4,253,220	-				-1.0
4,253,220	-				+1.0
4,253,220	-				+0.3
4,253,220	-				+0.3
4,253,220	-				+0.4
4,253,220	-				+0.3
4,253,319	-				-0.2
4,253,357	+				-0.4
4,253,357	+				-0.1