Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14275 and PS417_14280 overlap by 4 nucleotides PS417_14280 and PS417_14285 are separated by 204 nucleotides
PS417_14275: PS417_14275 - hypothetical protein, at 3,123,390 to 3,124,307
_14275
PS417_14280: PS417_14280 - hypothetical protein, at 3,124,304 to 3,125,230
_14280
PS417_14285: PS417_14285 - hypothetical protein, at 3,125,435 to 3,126,211
_14285
Position (kb) 3124
3125
3126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3123.337 kb on - strand at 3123.400 kb on + strand at 3123.552 kb on + strand at 3123.553 kb on - strand, within PS417_14275 at 3123.762 kb on + strand, within PS417_14275 at 3123.762 kb on + strand, within PS417_14275 at 3123.828 kb on + strand, within PS417_14275 at 3123.828 kb on + strand, within PS417_14275 at 3123.880 kb on - strand, within PS417_14275 at 3123.952 kb on - strand, within PS417_14275 at 3124.072 kb on - strand, within PS417_14275 at 3124.201 kb on - strand at 3124.201 kb on - strand, within PS417_14275 at 3124.257 kb on + strand at 3124.306 kb on - strand at 3124.306 kb on - strand at 3124.389 kb on + strand at 3124.389 kb on + strand at 3124.390 kb on - strand at 3124.390 kb on - strand at 3124.553 kb on + strand, within PS417_14280 at 3124.762 kb on - strand, within PS417_14280 at 3124.920 kb on + strand, within PS417_14280 at 3124.921 kb on - strand, within PS417_14280 at 3125.103 kb on - strand, within PS417_14280 at 3125.300 kb on - strand at 3125.300 kb on - strand at 3125.344 kb on + strand at 3125.422 kb on + strand at 3125.422 kb on + strand at 3125.504 kb on - strand at 3125.516 kb on + strand, within PS417_14285 at 3125.517 kb on - strand, within PS417_14285 at 3125.782 kb on - strand, within PS417_14285 at 3125.917 kb on - strand, within PS417_14285 at 3125.919 kb on + strand, within PS417_14285 at 3125.919 kb on + strand, within PS417_14285 at 3125.919 kb on + strand, within PS417_14285 at 3125.920 kb on - strand, within PS417_14285 at 3125.984 kb on - strand, within PS417_14285 at 3126.086 kb on + strand, within PS417_14285 at 3126.149 kb on + strand at 3126.177 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 3,123,337 - -0.2 3,123,400 + +3.0 3,123,552 + +1.0 3,123,553 - PS417_14275 0.18 +0.5 3,123,762 + PS417_14275 0.41 -0.7 3,123,762 + PS417_14275 0.41 +0.4 3,123,828 + PS417_14275 0.48 +1.3 3,123,828 + PS417_14275 0.48 -0.6 3,123,880 - PS417_14275 0.53 -1.3 3,123,952 - PS417_14275 0.61 +0.4 3,124,072 - PS417_14275 0.74 +0.4 3,124,201 - +0.0 3,124,201 - PS417_14275 0.88 -0.3 3,124,257 + -0.1 3,124,306 - +0.6 3,124,306 - +1.0 3,124,389 + -0.5 3,124,389 + +0.6 3,124,390 - +0.6 3,124,390 - +2.6 3,124,553 + PS417_14280 0.27 -0.6 3,124,762 - PS417_14280 0.49 -3.4 3,124,920 + PS417_14280 0.66 -1.0 3,124,921 - PS417_14280 0.67 -2.0 3,125,103 - PS417_14280 0.86 -1.0 3,125,300 - -0.0 3,125,300 - +1.4 3,125,344 + +0.4 3,125,422 + -0.3 3,125,422 + +0.5 3,125,504 - +0.4 3,125,516 + PS417_14285 0.10 +0.7 3,125,517 - PS417_14285 0.11 +0.8 3,125,782 - PS417_14285 0.45 -0.2 3,125,917 - PS417_14285 0.62 +1.2 3,125,919 + PS417_14285 0.62 -2.9 3,125,919 + PS417_14285 0.62 -0.4 3,125,919 + PS417_14285 0.62 -0.1 3,125,920 - PS417_14285 0.62 -0.2 3,125,984 - PS417_14285 0.71 +2.6 3,126,086 + PS417_14285 0.84 +0.4 3,126,149 + -0.8 3,126,177 - -1.7
Or see this region's nucleotide sequence