Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01330 and PS417_01335 are separated by 151 nucleotides PS417_01335 and PS417_01340 are separated by 121 nucleotides
PS417_01330: PS417_01330 - dTDP-glucose 4,6-dehydratase, at 287,741 to 288,823
_01330
PS417_01335: PS417_01335 - hypothetical protein, at 288,975 to 291,875
_01335
PS417_01340: PS417_01340 - agmatine deiminase, at 291,997 to 293,103
_01340
Position (kb) 288
289
290
291
292 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 288.868 kb on + strand at 288.868 kb on + strand at 288.869 kb on - strand at 288.945 kb on + strand at 288.946 kb on - strand at 288.946 kb on - strand at 288.946 kb on - strand at 289.009 kb on + strand at 289.063 kb on - strand at 289.114 kb on - strand at 289.114 kb on - strand at 289.114 kb on - strand at 289.209 kb on - strand at 289.314 kb on + strand, within PS417_01335 at 289.315 kb on - strand, within PS417_01335 at 289.315 kb on - strand, within PS417_01335 at 289.951 kb on + strand, within PS417_01335 at 289.951 kb on + strand, within PS417_01335 at 289.952 kb on - strand, within PS417_01335 at 290.288 kb on + strand, within PS417_01335 at 290.321 kb on - strand, within PS417_01335 at 290.321 kb on - strand, within PS417_01335 at 290.646 kb on + strand, within PS417_01335 at 290.715 kb on + strand, within PS417_01335 at 291.136 kb on - strand, within PS417_01335 at 291.216 kb on + strand, within PS417_01335 at 291.217 kb on - strand, within PS417_01335 at 291.267 kb on + strand, within PS417_01335 at 291.268 kb on - strand, within PS417_01335 at 291.332 kb on + strand, within PS417_01335 at 291.386 kb on + strand, within PS417_01335 at 291.386 kb on + strand, within PS417_01335 at 291.387 kb on - strand, within PS417_01335 at 291.387 kb on - strand at 291.387 kb on - strand, within PS417_01335 at 291.435 kb on - strand, within PS417_01335 at 291.475 kb on - strand, within PS417_01335 at 291.871 kb on + strand at 291.873 kb on + strand at 291.873 kb on + strand at 291.874 kb on - strand at 291.874 kb on - strand at 292.723 kb on + strand, within PS417_01340 at 292.723 kb on + strand, within PS417_01340 at 292.724 kb on - strand, within PS417_01340 at 292.798 kb on - strand, within PS417_01340 at 292.798 kb on - strand, within PS417_01340 at 292.822 kb on + strand, within PS417_01340
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 288,868 + -0.1 288,868 + -0.1 288,869 - +0.4 288,945 + -0.5 288,946 - +0.1 288,946 - +0.5 288,946 - -0.0 289,009 + +0.5 289,063 - -0.4 289,114 - -2.5 289,114 - +1.1 289,114 - +0.1 289,209 - -0.0 289,314 + PS417_01335 0.12 +0.7 289,315 - PS417_01335 0.12 +0.4 289,315 - PS417_01335 0.12 +0.1 289,951 + PS417_01335 0.34 +0.4 289,951 + PS417_01335 0.34 +0.8 289,952 - PS417_01335 0.34 +0.2 290,288 + PS417_01335 0.45 -1.9 290,321 - PS417_01335 0.46 +0.9 290,321 - PS417_01335 0.46 -0.3 290,646 + PS417_01335 0.58 -0.0 290,715 + PS417_01335 0.60 -0.5 291,136 - PS417_01335 0.74 +3.1 291,216 + PS417_01335 0.77 +0.2 291,217 - PS417_01335 0.77 +0.1 291,267 + PS417_01335 0.79 +0.9 291,268 - PS417_01335 0.79 +0.7 291,332 + PS417_01335 0.81 -0.2 291,386 + PS417_01335 0.83 +0.9 291,386 + PS417_01335 0.83 +0.1 291,387 - PS417_01335 0.83 -0.3 291,387 - -0.9 291,387 - PS417_01335 0.83 -1.3 291,435 - PS417_01335 0.85 -2.3 291,475 - PS417_01335 0.86 +0.3 291,871 + -0.0 291,873 + +0.5 291,873 + +0.3 291,874 - -0.5 291,874 - -0.8 292,723 + PS417_01340 0.66 -0.1 292,723 + PS417_01340 0.66 +0.2 292,724 - PS417_01340 0.66 -0.9 292,798 - PS417_01340 0.72 +0.4 292,798 - PS417_01340 0.72 -0.9 292,822 + PS417_01340 0.75 -0.4
Or see this region's nucleotide sequence