Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01190 and PS417_01195 are separated by 115 nucleotides PS417_01195 and PS417_01200 are separated by 39 nucleotides PS417_01200 and PS417_01205 are separated by 104 nucleotides
PS417_01190: PS417_01190 - diguanylate phosphodiesterase, at 262,104 to 262,883
_01190
PS417_01195: PS417_01195 - RNA-binding protein S4, at 262,999 to 263,406
_01195
PS417_01200: PS417_01200 - phosphoesterase, at 263,446 to 264,246
_01200
PS417_01205: PS417_01205 - molecular chaperone Hsp33, at 264,351 to 265,253
_01205
Position (kb) 263
264
265 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 262.465 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.470 kb on - strand, within PS417_01190 at 262.473 kb on + strand, within PS417_01190 at 262.473 kb on + strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.524 kb on - strand, within PS417_01190 at 262.575 kb on + strand, within PS417_01190 at 262.575 kb on + strand, within PS417_01190 at 262.576 kb on - strand, within PS417_01190 at 262.649 kb on + strand, within PS417_01190 at 262.701 kb on + strand, within PS417_01190 at 262.888 kb on + strand at 262.889 kb on - strand at 262.909 kb on + strand at 262.909 kb on + strand at 262.909 kb on + strand at 262.910 kb on - strand at 262.923 kb on + strand at 262.923 kb on + strand at 262.924 kb on - strand at 263.065 kb on + strand, within PS417_01195 at 263.066 kb on - strand at 263.257 kb on + strand, within PS417_01195 at 263.257 kb on + strand, within PS417_01195 at 263.539 kb on + strand, within PS417_01200 at 263.561 kb on + strand, within PS417_01200 at 263.561 kb on + strand, within PS417_01200 at 263.562 kb on - strand, within PS417_01200 at 263.562 kb on - strand, within PS417_01200 at 263.609 kb on + strand, within PS417_01200 at 263.609 kb on + strand, within PS417_01200 at 263.609 kb on + strand, within PS417_01200 at 263.859 kb on + strand, within PS417_01200 at 263.877 kb on + strand, within PS417_01200 at 263.878 kb on - strand, within PS417_01200 at 263.937 kb on + strand, within PS417_01200 at 263.944 kb on + strand, within PS417_01200 at 263.945 kb on - strand, within PS417_01200 at 264.058 kb on + strand, within PS417_01200 at 264.184 kb on + strand at 264.184 kb on + strand at 264.246 kb on + strand at 264.247 kb on - strand at 264.316 kb on + strand at 264.316 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 262,465 + PS417_01190 0.46 +0.7 262,469 + PS417_01190 0.47 -1.3 262,469 + PS417_01190 0.47 -2.7 262,469 + PS417_01190 0.47 -0.5 262,469 + PS417_01190 0.47 -0.4 262,469 + PS417_01190 0.47 -0.5 262,469 + PS417_01190 0.47 -0.2 262,469 + PS417_01190 0.47 -0.8 262,469 + PS417_01190 0.47 +0.3 262,469 + PS417_01190 0.47 -1.4 262,470 - PS417_01190 0.47 +0.1 262,473 + PS417_01190 0.47 +1.0 262,473 + PS417_01190 0.47 -0.2 262,474 - PS417_01190 0.47 -0.2 262,474 - PS417_01190 0.47 -2.8 262,474 - PS417_01190 0.47 -0.7 262,474 - PS417_01190 0.47 -0.1 262,523 + PS417_01190 0.54 +0.8 262,523 + PS417_01190 0.54 +0.3 262,523 + PS417_01190 0.54 +0.6 262,523 + PS417_01190 0.54 -0.5 262,523 + PS417_01190 0.54 -2.5 262,524 - PS417_01190 0.54 +0.0 262,575 + PS417_01190 0.60 +0.7 262,575 + PS417_01190 0.60 -0.6 262,576 - PS417_01190 0.61 -0.4 262,649 + PS417_01190 0.70 +0.6 262,701 + PS417_01190 0.77 +0.8 262,888 + -0.1 262,889 - -0.6 262,909 + -0.5 262,909 + +0.1 262,909 + -0.0 262,910 - -0.3 262,923 + -3.5 262,923 + -0.7 262,924 - +0.8 263,065 + PS417_01195 0.16 +1.8 263,066 - +2.1 263,257 + PS417_01195 0.63 -0.9 263,257 + PS417_01195 0.63 +0.6 263,539 + PS417_01200 0.12 -0.5 263,561 + PS417_01200 0.14 -0.5 263,561 + PS417_01200 0.14 +0.1 263,562 - PS417_01200 0.14 +1.1 263,562 - PS417_01200 0.14 -1.1 263,609 + PS417_01200 0.20 -1.9 263,609 + PS417_01200 0.20 -0.5 263,609 + PS417_01200 0.20 +0.2 263,859 + PS417_01200 0.52 -0.0 263,877 + PS417_01200 0.54 +0.3 263,878 - PS417_01200 0.54 -1.4 263,937 + PS417_01200 0.61 -1.5 263,944 + PS417_01200 0.62 -1.1 263,945 - PS417_01200 0.62 -0.4 264,058 + PS417_01200 0.76 -1.1 264,184 + -0.5 264,184 + +1.2 264,246 + -0.4 264,247 - -0.7 264,316 + +2.4 264,316 + -1.9
Or see this region's nucleotide sequence