Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00990 and PS417_00995 are separated by 226 nucleotides PS417_00995 and PS417_01000 are separated by 50 nucleotides
PS417_00990: PS417_00990 - LysR family transcriptional regulator, at 217,839 to 218,690
_00990
PS417_00995: PS417_00995 - alpha/beta hydrolase, at 218,917 to 219,498
_00995
PS417_01000: PS417_01000 - Fis family transcriptional regulator, at 219,549 to 220,475
_01000
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 217.981 kb on + strand, within PS417_00990 at 217.982 kb on - strand, within PS417_00990 at 218.040 kb on + strand, within PS417_00990 at 218.040 kb on + strand, within PS417_00990 at 218.516 kb on + strand, within PS417_00990 at 218.516 kb on + strand, within PS417_00990 at 218.517 kb on - strand, within PS417_00990 at 218.517 kb on - strand, within PS417_00990 at 218.540 kb on - strand, within PS417_00990 at 218.610 kb on + strand at 218.610 kb on + strand at 218.610 kb on + strand at 218.627 kb on - strand at 218.627 kb on - strand at 218.839 kb on - strand at 218.874 kb on + strand at 218.875 kb on + strand at 218.875 kb on + strand at 218.875 kb on + strand at 218.877 kb on + strand at 218.878 kb on - strand at 219.188 kb on + strand, within PS417_00995 at 219.399 kb on + strand, within PS417_00995 at 219.446 kb on - strand at 219.452 kb on - strand at 219.522 kb on + strand at 219.822 kb on + strand, within PS417_01000 at 219.921 kb on + strand, within PS417_01000 at 219.922 kb on - strand, within PS417_01000 at 219.961 kb on + strand, within PS417_01000 at 220.111 kb on - strand, within PS417_01000 at 220.111 kb on - strand, within PS417_01000 at 220.182 kb on + strand, within PS417_01000 at 220.182 kb on + strand, within PS417_01000 at 220.182 kb on + strand, within PS417_01000 at 220.197 kb on + strand, within PS417_01000 at 220.197 kb on + strand, within PS417_01000 at 220.197 kb on + strand, within PS417_01000
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 217,981 + PS417_00990 0.17 -1.5 217,982 - PS417_00990 0.17 -0.3 218,040 + PS417_00990 0.24 +2.9 218,040 + PS417_00990 0.24 -0.6 218,516 + PS417_00990 0.79 +1.6 218,516 + PS417_00990 0.79 -0.5 218,517 - PS417_00990 0.80 +0.2 218,517 - PS417_00990 0.80 +0.4 218,540 - PS417_00990 0.82 -0.5 218,610 + +0.0 218,610 + +0.2 218,610 + -1.7 218,627 - +2.3 218,627 - -0.7 218,839 - -0.1 218,874 + -0.1 218,875 + -0.5 218,875 + -0.2 218,875 + -2.2 218,877 + +1.8 218,878 - -0.5 219,188 + PS417_00995 0.47 -0.6 219,399 + PS417_00995 0.83 -0.8 219,446 - +0.4 219,452 - +0.9 219,522 + +0.4 219,822 + PS417_01000 0.29 -1.7 219,921 + PS417_01000 0.40 -0.6 219,922 - PS417_01000 0.40 +0.5 219,961 + PS417_01000 0.44 -0.3 220,111 - PS417_01000 0.61 -0.6 220,111 - PS417_01000 0.61 +0.1 220,182 + PS417_01000 0.68 +0.5 220,182 + PS417_01000 0.68 +0.3 220,182 + PS417_01000 0.68 +0.9 220,197 + PS417_01000 0.70 +0.3 220,197 + PS417_01000 0.70 +0.2 220,197 + PS417_01000 0.70 +0.4
Or see this region's nucleotide sequence