Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00805 and PS417_00810 are separated by 152 nucleotides PS417_00810 and PS417_00815 overlap by 4 nucleotides PS417_00815 and PS417_00820 are separated by 291 nucleotides
PS417_00805: PS417_00805 - hypothetical protein, at 178,006 to 179,646
_00805
PS417_00810: PS417_00810 - RNA polymerase sigma factor, at 179,799 to 180,371
_00810
PS417_00815: PS417_00815 - hypothetical protein, at 180,368 to 180,961
_00815
PS417_00820: PS417_00820 - hypothetical protein, at 181,253 to 181,504
_00820
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.953 kb on + strand, within PS417_00805 at 178.954 kb on - strand, within PS417_00805 at 178.996 kb on - strand, within PS417_00805 at 178.999 kb on + strand, within PS417_00805 at 178.999 kb on + strand, within PS417_00805 at 178.999 kb on + strand, within PS417_00805 at 179.000 kb on - strand, within PS417_00805 at 179.000 kb on - strand, within PS417_00805 at 179.047 kb on + strand, within PS417_00805 at 179.048 kb on - strand, within PS417_00805 at 179.048 kb on - strand, within PS417_00805 at 179.053 kb on + strand, within PS417_00805 at 179.053 kb on + strand, within PS417_00805 at 179.054 kb on - strand, within PS417_00805 at 179.387 kb on - strand, within PS417_00805 at 179.529 kb on + strand at 179.609 kb on + strand at 179.796 kb on + strand at 179.796 kb on + strand at 179.796 kb on + strand at 179.797 kb on - strand at 179.797 kb on - strand at 179.797 kb on - strand at 179.883 kb on + strand, within PS417_00810 at 179.883 kb on + strand, within PS417_00810 at 180.105 kb on + strand, within PS417_00810 at 180.105 kb on + strand, within PS417_00810 at 181.012 kb on + strand at 181.013 kb on - strand at 181.013 kb on - strand at 181.097 kb on + strand at 181.097 kb on + strand at 181.097 kb on + strand at 181.098 kb on - strand at 181.110 kb on - strand at 181.255 kb on - strand at 181.255 kb on - strand at 181.278 kb on - strand at 181.294 kb on - strand, within PS417_00820 at 181.307 kb on + strand, within PS417_00820 at 181.307 kb on + strand, within PS417_00820 at 181.307 kb on + strand, within PS417_00820 at 181.308 kb on - strand, within PS417_00820 at 181.308 kb on - strand, within PS417_00820 at 181.308 kb on - strand, within PS417_00820 at 181.308 kb on - strand at 181.308 kb on - strand, within PS417_00820 at 181.350 kb on - strand, within PS417_00820 at 181.361 kb on + strand, within PS417_00820
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 178,953 + PS417_00805 0.58 +1.1 178,954 - PS417_00805 0.58 -0.2 178,996 - PS417_00805 0.60 +0.8 178,999 + PS417_00805 0.61 +1.1 178,999 + PS417_00805 0.61 +0.9 178,999 + PS417_00805 0.61 +0.1 179,000 - PS417_00805 0.61 -0.2 179,000 - PS417_00805 0.61 +0.3 179,047 + PS417_00805 0.63 -0.1 179,048 - PS417_00805 0.63 -0.6 179,048 - PS417_00805 0.63 +0.2 179,053 + PS417_00805 0.64 -0.2 179,053 + PS417_00805 0.64 -0.3 179,054 - PS417_00805 0.64 +1.1 179,387 - PS417_00805 0.84 -0.5 179,529 + -1.2 179,609 + +0.4 179,796 + -1.3 179,796 + +0.6 179,796 + -0.3 179,797 - +0.3 179,797 - +0.7 179,797 - -0.3 179,883 + PS417_00810 0.15 -0.5 179,883 + PS417_00810 0.15 -0.1 180,105 + PS417_00810 0.53 -1.3 180,105 + PS417_00810 0.53 -1.9 181,012 + +0.3 181,013 - +0.7 181,013 - -1.4 181,097 + -0.3 181,097 + +2.1 181,097 + -0.3 181,098 - +1.1 181,110 - +0.9 181,255 - +1.1 181,255 - -0.4 181,278 - +1.1 181,294 - PS417_00820 0.16 +0.3 181,307 + PS417_00820 0.21 +0.2 181,307 + PS417_00820 0.21 +0.1 181,307 + PS417_00820 0.21 -1.1 181,308 - PS417_00820 0.22 +0.2 181,308 - PS417_00820 0.22 +1.8 181,308 - PS417_00820 0.22 +0.3 181,308 - -0.5 181,308 - PS417_00820 0.22 -1.7 181,350 - PS417_00820 0.38 -1.3 181,361 + PS417_00820 0.43 -1.7
Or see this region's nucleotide sequence