Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06390 and PS417_06395 are separated by 57 nucleotides PS417_06395 and PS417_06400 are separated by 13 nucleotides PS417_06400 and PS417_06405 are separated by 26 nucleotides PS417_06405 and PS417_06410 overlap by 4 nucleotides
PS417_06390: PS417_06390 - DEAD/DEAH box helicase, at 1,415,550 to 1,418,030
_06390
PS417_06395: PS417_06395 - amino acid transporter, at 1,418,088 to 1,418,852
_06395
PS417_06400: PS417_06400 - succinylglutamate desuccinylase, at 1,418,866 to 1,419,984
_06400
PS417_06405: PS417_06405 - amino acid ABC transporter permease, at 1,420,011 to 1,420,721
_06405
PS417_06410: PS417_06410 - amino acid ABC transporter permease, at 1,420,718 to 1,421,446
_06410
Position (kb) 1418
1419
1420 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1417.888 kb on + strand at 1417.888 kb on + strand at 1417.889 kb on - strand at 1417.889 kb on - strand at 1417.954 kb on - strand at 1418.459 kb on - strand, within PS417_06395 at 1418.543 kb on + strand, within PS417_06395 at 1418.543 kb on + strand, within PS417_06395 at 1418.544 kb on - strand, within PS417_06395 at 1418.848 kb on + strand at 1418.848 kb on + strand at 1418.848 kb on + strand at 1418.848 kb on + strand at 1418.878 kb on + strand at 1418.879 kb on - strand at 1419.054 kb on - strand, within PS417_06400 at 1419.076 kb on + strand, within PS417_06400 at 1419.194 kb on + strand, within PS417_06400 at 1419.404 kb on + strand, within PS417_06400 at 1419.404 kb on + strand, within PS417_06400 at 1419.405 kb on - strand, within PS417_06400 at 1419.707 kb on + strand, within PS417_06400 at 1419.884 kb on + strand at 1420.130 kb on + strand, within PS417_06405 at 1420.130 kb on + strand, within PS417_06405 at 1420.230 kb on - strand, within PS417_06405 at 1420.234 kb on + strand, within PS417_06405 at 1420.234 kb on + strand, within PS417_06405 at 1420.235 kb on - strand, within PS417_06405 at 1420.235 kb on - strand, within PS417_06405 at 1420.237 kb on + strand, within PS417_06405 at 1420.276 kb on + strand, within PS417_06405 at 1420.277 kb on - strand, within PS417_06405 at 1420.277 kb on - strand, within PS417_06405 at 1420.474 kb on + strand, within PS417_06405 at 1420.474 kb on + strand, within PS417_06405 at 1420.474 kb on + strand, within PS417_06405 at 1420.487 kb on - strand, within PS417_06405 at 1420.487 kb on - strand, within PS417_06405 at 1420.507 kb on + strand, within PS417_06405 at 1420.507 kb on + strand, within PS417_06405 at 1420.531 kb on + strand, within PS417_06405 at 1420.531 kb on + strand, within PS417_06405 at 1420.532 kb on - strand, within PS417_06405 at 1420.537 kb on + strand, within PS417_06405 at 1420.537 kb on + strand, within PS417_06405 at 1420.557 kb on + strand, within PS417_06405 at 1420.680 kb on - strand at 1420.681 kb on + strand at 1420.682 kb on - strand at 1420.682 kb on - strand at 1420.700 kb on - strand at 1420.750 kb on - strand at 1420.804 kb on - strand at 1420.842 kb on + strand, within PS417_06410 at 1420.842 kb on + strand, within PS417_06410
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 1,417,888 + -0.0 1,417,888 + +0.3 1,417,889 - -0.1 1,417,889 - +1.4 1,417,954 - +1.0 1,418,459 - PS417_06395 0.48 +1.7 1,418,543 + PS417_06395 0.59 -0.6 1,418,543 + PS417_06395 0.59 -0.0 1,418,544 - PS417_06395 0.60 +1.0 1,418,848 + -0.9 1,418,848 + +0.4 1,418,848 + -0.7 1,418,848 + +3.3 1,418,878 + +0.1 1,418,879 - +0.1 1,419,054 - PS417_06400 0.17 -2.4 1,419,076 + PS417_06400 0.19 -0.3 1,419,194 + PS417_06400 0.29 -2.6 1,419,404 + PS417_06400 0.48 -1.6 1,419,404 + PS417_06400 0.48 -0.4 1,419,405 - PS417_06400 0.48 -0.3 1,419,707 + PS417_06400 0.75 -0.3 1,419,884 + -0.9 1,420,130 + PS417_06405 0.17 +0.0 1,420,130 + PS417_06405 0.17 +0.1 1,420,230 - PS417_06405 0.31 +1.4 1,420,234 + PS417_06405 0.31 +1.3 1,420,234 + PS417_06405 0.31 -0.6 1,420,235 - PS417_06405 0.32 +0.2 1,420,235 - PS417_06405 0.32 +0.3 1,420,237 + PS417_06405 0.32 +0.0 1,420,276 + PS417_06405 0.37 -0.0 1,420,277 - PS417_06405 0.37 -1.3 1,420,277 - PS417_06405 0.37 -0.0 1,420,474 + PS417_06405 0.65 +0.4 1,420,474 + PS417_06405 0.65 +0.2 1,420,474 + PS417_06405 0.65 +1.5 1,420,487 - PS417_06405 0.67 +1.1 1,420,487 - PS417_06405 0.67 +0.2 1,420,507 + PS417_06405 0.70 -0.9 1,420,507 + PS417_06405 0.70 -0.0 1,420,531 + PS417_06405 0.73 +0.3 1,420,531 + PS417_06405 0.73 +0.8 1,420,532 - PS417_06405 0.73 +0.6 1,420,537 + PS417_06405 0.74 +0.2 1,420,537 + PS417_06405 0.74 -1.0 1,420,557 + PS417_06405 0.77 -0.3 1,420,680 - -0.8 1,420,681 + +0.6 1,420,682 - -0.7 1,420,682 - +0.1 1,420,700 - -0.2 1,420,750 - +1.3 1,420,804 - -0.0 1,420,842 + PS417_06410 0.17 -1.5 1,420,842 + PS417_06410 0.17 +0.3
Or see this region's nucleotide sequence