Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06135 and PS417_06140 are separated by 182 nucleotides PS417_06140 and PS417_06145 are separated by 139 nucleotides PS417_06145 and PS417_06150 are separated by 54 nucleotides PS417_06150 and PS417_06155 overlap by 1 nucleotides
PS417_06135: PS417_06135 - glycerol-3-phosphate acyltransferase, at 1,359,056 to 1,361,575
_06135
PS417_06140: PS417_06140 - cold-shock protein, at 1,361,758 to 1,361,967
_06140
PS417_06145: PS417_06145 - hypothetical protein, at 1,362,107 to 1,362,484
_06145
PS417_06150: PS417_06150 - SAM-dependent methlyltransferase, at 1,362,539 to 1,363,348
_06150
PS417_06155: PS417_06155 - succinyl-diaminopimelate desuccinylase, at 1,363,348 to 1,364,499
_06155
Position (kb) 1362
1363 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1361.112 kb on - strand, within PS417_06135 at 1361.445 kb on + strand at 1361.446 kb on - strand at 1361.446 kb on - strand at 1361.446 kb on - strand at 1361.521 kb on - strand at 1361.550 kb on - strand at 1361.575 kb on + strand at 1361.750 kb on + strand at 1361.810 kb on - strand, within PS417_06140 at 1361.836 kb on - strand, within PS417_06140 at 1361.854 kb on + strand, within PS417_06140 at 1361.911 kb on + strand, within PS417_06140 at 1361.912 kb on - strand, within PS417_06140 at 1362.295 kb on - strand, within PS417_06145 at 1362.536 kb on + strand at 1362.541 kb on - strand at 1362.768 kb on + strand, within PS417_06150 at 1362.769 kb on - strand, within PS417_06150 at 1363.012 kb on + strand, within PS417_06150 at 1363.069 kb on - strand, within PS417_06150 at 1363.251 kb on + strand, within PS417_06150
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 1,361,112 - PS417_06135 0.82 -0.6 1,361,445 + +0.0 1,361,446 - +1.5 1,361,446 - -0.0 1,361,446 - -0.1 1,361,521 - +1.6 1,361,550 - +0.1 1,361,575 + -0.6 1,361,750 + +4.0 1,361,810 - PS417_06140 0.25 -1.0 1,361,836 - PS417_06140 0.37 +0.5 1,361,854 + PS417_06140 0.46 -0.3 1,361,911 + PS417_06140 0.73 -0.7 1,361,912 - PS417_06140 0.73 -0.0 1,362,295 - PS417_06145 0.50 -0.8 1,362,536 + +0.6 1,362,541 - -0.2 1,362,768 + PS417_06150 0.28 +0.3 1,362,769 - PS417_06150 0.28 +0.6 1,363,012 + PS417_06150 0.58 -1.3 1,363,069 - PS417_06150 0.65 -0.2 1,363,251 + PS417_06150 0.88 +2.7
Or see this region's nucleotide sequence