Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4130 and Psyr_4131 are separated by 904 nucleotides Psyr_4131 and Psyr_4132 are separated by 573 nucleotides
Psyr_4130: Psyr_4130 - Peptidase S1, chymotrypsin:PDZ/DHR/GLGF, at 4,919,176 to 4,920,336
_4130
Psyr_4131: Psyr_4131 - Transposase, IS111A/IS1328/IS1533:Transposase IS116/IS110/IS902, at 4,921,241 to 4,922,170
_4131
Psyr_4132: Psyr_4132 - histidinol phosphate aminotransferase apoenzyme, at 4,922,744 to 4,923,796
_4132
Position (kb) 4921
4922
4923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4920.360 kb on + strand at 4920.361 kb on - strand at 4920.361 kb on - strand at 4920.361 kb on - strand at 4920.455 kb on - strand at 4920.455 kb on - strand at 4920.455 kb on - strand at 4920.455 kb on - strand at 4920.457 kb on - strand at 4920.457 kb on - strand at 4920.457 kb on - strand at 4920.459 kb on - strand at 4920.459 kb on - strand at 4921.117 kb on + strand at 4921.117 kb on + strand at 4921.117 kb on + strand at 4921.117 kb on + strand at 4921.117 kb on + strand at 4921.117 kb on + strand at 4921.189 kb on + strand at 4921.189 kb on + strand at 4921.190 kb on - strand at 4921.190 kb on - strand at 4921.192 kb on - strand at 4921.388 kb on - strand, within Psyr_4131 at 4921.389 kb on + strand, within Psyr_4131 at 4921.389 kb on + strand, within Psyr_4131 at 4921.389 kb on + strand, within Psyr_4131 at 4921.390 kb on - strand, within Psyr_4131 at 4921.390 kb on - strand, within Psyr_4131 at 4921.390 kb on - strand, within Psyr_4131 at 4921.416 kb on + strand, within Psyr_4131 at 4921.416 kb on + strand, within Psyr_4131 at 4921.416 kb on + strand, within Psyr_4131 at 4921.416 kb on + strand, within Psyr_4131 at 4921.416 kb on + strand, within Psyr_4131 at 4921.416 kb on + strand, within Psyr_4131 at 4921.416 kb on + strand, within Psyr_4131 at 4921.417 kb on - strand, within Psyr_4131 at 4921.417 kb on - strand, within Psyr_4131 at 4921.417 kb on - strand, within Psyr_4131 at 4921.417 kb on - strand, within Psyr_4131 at 4921.417 kb on - strand, within Psyr_4131 at 4921.417 kb on - strand, within Psyr_4131 at 4921.417 kb on - strand, within Psyr_4131 at 4921.417 kb on - strand, within Psyr_4131 at 4921.417 kb on - strand, within Psyr_4131 at 4921.417 kb on - strand, within Psyr_4131 at 4921.449 kb on + strand, within Psyr_4131 at 4921.450 kb on - strand, within Psyr_4131 at 4921.450 kb on - strand, within Psyr_4131 at 4921.450 kb on - strand, within Psyr_4131 at 4921.450 kb on - strand, within Psyr_4131 at 4921.489 kb on + strand, within Psyr_4131 at 4921.491 kb on + strand, within Psyr_4131 at 4921.491 kb on + strand, within Psyr_4131 at 4921.491 kb on + strand, within Psyr_4131 at 4921.492 kb on - strand, within Psyr_4131 at 4921.492 kb on - strand, within Psyr_4131 at 4921.492 kb on - strand, within Psyr_4131 at 4921.492 kb on - strand, within Psyr_4131 at 4921.492 kb on - strand, within Psyr_4131 at 4921.661 kb on + strand, within Psyr_4131 at 4921.662 kb on - strand, within Psyr_4131 at 4921.662 kb on - strand, within Psyr_4131 at 4921.704 kb on + strand, within Psyr_4131 at 4921.704 kb on + strand, within Psyr_4131 at 4921.704 kb on + strand, within Psyr_4131 at 4921.704 kb on + strand, within Psyr_4131 at 4921.704 kb on + strand, within Psyr_4131 at 4921.705 kb on - strand, within Psyr_4131 at 4921.705 kb on - strand, within Psyr_4131 at 4921.705 kb on - strand, within Psyr_4131 at 4921.710 kb on + strand, within Psyr_4131 at 4921.711 kb on - strand, within Psyr_4131 at 4921.711 kb on - strand, within Psyr_4131 at 4921.711 kb on - strand, within Psyr_4131 at 4921.711 kb on - strand, within Psyr_4131 at 4921.711 kb on - strand, within Psyr_4131 at 4921.711 kb on - strand, within Psyr_4131 at 4921.945 kb on + strand, within Psyr_4131 at 4921.949 kb on - strand, within Psyr_4131 at 4921.949 kb on - strand, within Psyr_4131 at 4922.002 kb on - strand, within Psyr_4131 at 4922.002 kb on - strand, within Psyr_4131 at 4922.053 kb on - strand, within Psyr_4131 at 4922.083 kb on + strand at 4922.083 kb on + strand at 4922.084 kb on - strand at 4922.086 kb on + strand at 4922.086 kb on + strand at 4922.086 kb on + strand at 4922.086 kb on + strand at 4922.087 kb on - strand at 4922.087 kb on - strand at 4922.087 kb on - strand at 4922.087 kb on - strand at 4922.090 kb on + strand at 4922.090 kb on + strand at 4922.090 kb on + strand at 4922.091 kb on - strand at 4922.174 kb on + strand at 4922.174 kb on + strand at 4922.174 kb on + strand at 4922.174 kb on + strand at 4922.175 kb on - strand at 4922.175 kb on - strand at 4922.175 kb on - strand at 4922.311 kb on - strand at 4922.311 kb on - strand at 4922.360 kb on + strand at 4922.361 kb on - strand at 4922.402 kb on - strand at 4922.412 kb on - strand at 4922.412 kb on - strand at 4922.412 kb on - strand at 4922.414 kb on - strand at 4922.414 kb on - strand at 4922.414 kb on - strand at 4922.414 kb on - strand at 4922.414 kb on - strand at 4922.414 kb on - strand at 4922.414 kb on - strand at 4922.416 kb on - strand at 4922.416 kb on - strand at 4922.676 kb on + strand at 4922.676 kb on + strand at 4922.676 kb on + strand at 4922.677 kb on - strand at 4922.677 kb on - strand at 4922.680 kb on + strand at 4922.680 kb on + strand at 4922.680 kb on + strand at 4922.680 kb on + strand at 4922.680 kb on + strand at 4922.680 kb on + strand at 4922.680 kb on + strand at 4922.680 kb on + strand at 4922.680 kb on + strand at 4922.681 kb on - strand at 4922.681 kb on - strand at 4922.681 kb on - strand at 4922.681 kb on - strand at 4922.681 kb on - strand at 4922.681 kb on - strand at 4922.681 kb on - strand at 4922.681 kb on - strand at 4923.073 kb on - strand, within Psyr_4132
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 4,920,360 + +0.2 4,920,361 - -0.8 4,920,361 - +0.2 4,920,361 - +1.0 4,920,455 - -2.8 4,920,455 - +0.9 4,920,455 - +0.6 4,920,455 - +2.6 4,920,457 - +0.5 4,920,457 - -0.6 4,920,457 - +0.3 4,920,459 - -1.2 4,920,459 - -0.7 4,921,117 + -1.4 4,921,117 + -0.2 4,921,117 + +0.0 4,921,117 + +0.0 4,921,117 + +0.2 4,921,117 + +1.8 4,921,189 + -1.9 4,921,189 + -0.0 4,921,190 - +1.2 4,921,190 - +0.6 4,921,192 - -0.2 4,921,388 - Psyr_4131 0.16 -0.7 4,921,389 + Psyr_4131 0.16 +1.1 4,921,389 + Psyr_4131 0.16 -0.0 4,921,389 + Psyr_4131 0.16 -0.3 4,921,390 - Psyr_4131 0.16 +1.9 4,921,390 - Psyr_4131 0.16 +1.3 4,921,390 - Psyr_4131 0.16 -0.0 4,921,416 + Psyr_4131 0.19 -1.5 4,921,416 + Psyr_4131 0.19 +0.6 4,921,416 + Psyr_4131 0.19 +0.2 4,921,416 + Psyr_4131 0.19 -0.4 4,921,416 + Psyr_4131 0.19 -1.2 4,921,416 + Psyr_4131 0.19 +0.0 4,921,416 + Psyr_4131 0.19 +0.0 4,921,417 - Psyr_4131 0.19 -1.3 4,921,417 - Psyr_4131 0.19 +3.2 4,921,417 - Psyr_4131 0.19 +0.5 4,921,417 - Psyr_4131 0.19 -0.8 4,921,417 - Psyr_4131 0.19 +0.9 4,921,417 - Psyr_4131 0.19 -0.2 4,921,417 - Psyr_4131 0.19 -1.8 4,921,417 - Psyr_4131 0.19 +0.6 4,921,417 - Psyr_4131 0.19 +2.2 4,921,417 - Psyr_4131 0.19 -0.5 4,921,449 + Psyr_4131 0.22 -0.2 4,921,450 - Psyr_4131 0.22 +0.2 4,921,450 - Psyr_4131 0.22 -0.5 4,921,450 - Psyr_4131 0.22 +0.5 4,921,450 - Psyr_4131 0.22 +0.3 4,921,489 + Psyr_4131 0.27 -0.2 4,921,491 + Psyr_4131 0.27 +0.0 4,921,491 + Psyr_4131 0.27 -0.1 4,921,491 + Psyr_4131 0.27 -0.6 4,921,492 - Psyr_4131 0.27 -1.0 4,921,492 - Psyr_4131 0.27 -0.4 4,921,492 - Psyr_4131 0.27 +1.4 4,921,492 - Psyr_4131 0.27 -0.0 4,921,492 - Psyr_4131 0.27 -0.7 4,921,661 + Psyr_4131 0.45 -0.3 4,921,662 - Psyr_4131 0.45 -1.4 4,921,662 - Psyr_4131 0.45 +0.2 4,921,704 + Psyr_4131 0.50 +0.3 4,921,704 + Psyr_4131 0.50 -1.7 4,921,704 + Psyr_4131 0.50 +0.2 4,921,704 + Psyr_4131 0.50 -0.4 4,921,704 + Psyr_4131 0.50 -1.5 4,921,705 - Psyr_4131 0.50 +1.4 4,921,705 - Psyr_4131 0.50 +1.0 4,921,705 - Psyr_4131 0.50 +0.3 4,921,710 + Psyr_4131 0.50 +1.6 4,921,711 - Psyr_4131 0.51 +0.6 4,921,711 - Psyr_4131 0.51 +0.2 4,921,711 - Psyr_4131 0.51 +1.4 4,921,711 - Psyr_4131 0.51 +0.4 4,921,711 - Psyr_4131 0.51 +1.2 4,921,711 - Psyr_4131 0.51 -0.1 4,921,945 + Psyr_4131 0.76 +0.7 4,921,949 - Psyr_4131 0.76 +1.0 4,921,949 - Psyr_4131 0.76 -0.4 4,922,002 - Psyr_4131 0.82 -1.4 4,922,002 - Psyr_4131 0.82 -1.3 4,922,053 - Psyr_4131 0.87 -0.8 4,922,083 + -0.5 4,922,083 + -0.6 4,922,084 - -1.1 4,922,086 + -1.2 4,922,086 + -0.9 4,922,086 + -1.9 4,922,086 + -0.4 4,922,087 - +0.4 4,922,087 - -0.0 4,922,087 - +0.3 4,922,087 - -0.7 4,922,090 + -1.1 4,922,090 + -1.0 4,922,090 + +0.6 4,922,091 - -0.5 4,922,174 + -0.7 4,922,174 + +0.2 4,922,174 + +0.9 4,922,174 + +0.4 4,922,175 - -0.4 4,922,175 - +1.6 4,922,175 - -0.5 4,922,311 - +0.9 4,922,311 - -0.4 4,922,360 + +1.6 4,922,361 - -0.4 4,922,402 - -1.7 4,922,412 - +1.3 4,922,412 - +2.2 4,922,412 - +1.4 4,922,414 - +0.7 4,922,414 - -3.0 4,922,414 - -0.3 4,922,414 - +1.0 4,922,414 - +1.0 4,922,414 - -0.6 4,922,414 - +0.9 4,922,416 - +0.4 4,922,416 - +0.3 4,922,676 + -0.3 4,922,676 + -1.1 4,922,676 + +4.3 4,922,677 - +1.0 4,922,677 - -0.7 4,922,680 + -0.0 4,922,680 + +0.2 4,922,680 + -1.5 4,922,680 + -0.2 4,922,680 + +1.6 4,922,680 + -0.8 4,922,680 + -0.4 4,922,680 + +0.7 4,922,680 + +0.9 4,922,681 - -0.5 4,922,681 - +1.6 4,922,681 - -0.3 4,922,681 - -2.7 4,922,681 - -1.0 4,922,681 - +0.6 4,922,681 - +0.6 4,922,681 - -0.7 4,923,073 - Psyr_4132 0.31 -1.7
Or see this region's nucleotide sequence