Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3433

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
4,094,739	+		Psyr_3431	0.85	-0.6
4,094,739	+		Psyr_3431	0.85	-0.3
4,094,739	+		Psyr_3431	0.85	+0.5
4,094,769	+		Psyr_3431	0.88	-0.5
4,094,769	+		Psyr_3431	0.88	-0.5
4,094,769	+		Psyr_3431	0.88	+4.1
4,094,770	-		Psyr_3431	0.88	+2.1
4,094,770	-		Psyr_3431	0.88	+1.2
4,094,796	-				-0.7
4,094,796	-				-1.3
4,094,800	+				-0.7
4,094,800	+				+1.6
4,094,801	-				-0.6
4,094,814	+				-1.1
4,094,814	+				-1.0
4,095,048	+		Psyr_3432	0.23	-1.5
4,095,048	+		Psyr_3432	0.23	+0.4
4,095,049	-		Psyr_3432	0.23	-0.2
4,095,049	-		Psyr_3432	0.23	-0.2
4,095,049	-		Psyr_3432	0.23	+0.8
4,095,076	+		Psyr_3432	0.27	-0.9
4,095,406	+		Psyr_3432	0.71	-1.7
4,095,407	-		Psyr_3432	0.71	-0.2
4,095,407	-		Psyr_3432	0.71	-0.9
4,095,407	-		Psyr_3432	0.71	-0.1
4,095,407	-		Psyr_3432	0.71	+0.0
4,095,611	+				+1.0
4,095,611	+				+0.4
4,095,611	+				-0.0
4,095,612	-				-1.2
4,095,612	-				+0.1
4,095,612	-				+3.4
4,095,612	-				-0.1
4,095,635	-				-0.2
4,095,665	+				-2.8
4,095,666	-				-0.5
4,095,666	-				+0.1
4,095,666	-				-0.9
4,095,666	-				-1.5
4,095,713	+				+0.3
4,095,714	+				+0.3
4,095,881	+		Psyr_3433	0.23	+1.1
4,095,881	+		Psyr_3433	0.23	-1.7
4,095,882	-		Psyr_3433	0.23	-1.7
4,095,882	-		Psyr_3433	0.23	-2.6
4,095,982	+		Psyr_3433	0.31	+0.4
4,095,982	+		Psyr_3433	0.31	+1.7
4,095,982	+		Psyr_3433	0.31	-0.3
4,095,983	-		Psyr_3433	0.31	-1.3
4,096,176	-		Psyr_3433	0.48	-1.0
4,096,386	+		Psyr_3433	0.66	-0.6
4,096,386	+		Psyr_3433	0.66	-1.4
4,096,387	-		Psyr_3433	0.66	-1.1
4,096,449	+		Psyr_3433	0.71	+0.5
4,096,449	+		Psyr_3433	0.71	-0.7
4,096,693	+				-0.1
4,096,694	-				-1.4
4,096,694	-				-1.0
4,096,791	+				+0.9
4,096,791	+				-0.9
4,096,791	+				+0.7
4,096,792	-				-1.2
4,096,792	-				+1.6
4,096,835	+				-2.2
4,096,836	-				-0.5
4,096,932	-				-0.3
4,097,118	+		Psyr_3434	0.13	-1.1
4,097,119	-		Psyr_3434	0.13	+0.2
4,097,119	-		Psyr_3434	0.13	+0.5
4,097,302	+		Psyr_3434	0.21	-0.6
4,097,302	+		Psyr_3434	0.21	+2.1
4,097,302	+		Psyr_3434	0.21	+0.5
4,097,302	+		Psyr_3434	0.21	-0.1
4,097,303	-		Psyr_3434	0.21	-1.9
4,097,303	-		Psyr_3434	0.21	+1.4
4,097,306	+		Psyr_3434	0.21	+1.0
4,097,426	-		Psyr_3434	0.26	+1.5
4,097,426	-		Psyr_3434	0.26	-0.5
4,097,426	-		Psyr_3434	0.26	+0.7
4,097,648	+		Psyr_3434	0.36	+0.1