Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3292 and Psyr_3293 are separated by 130 nucleotides Psyr_3293 and Psyr_3294 are separated by 69 nucleotides Psyr_3294 and Psyr_3295 are separated by 204 nucleotides
Psyr_3292: Psyr_3292 - conserved hypothetical protein, at 3,939,635 to 3,940,072
_3292
Psyr_3293: Psyr_3293 - UspA, at 3,940,203 to 3,940,643
_3293
Psyr_3294: Psyr_3294 - ABC transporter, at 3,940,713 to 3,942,623
_3294
Psyr_3295: Psyr_3295 - SLT, at 3,942,828 to 3,944,756
_3295
Position (kb) 3940
3941
3942
3943 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3939.738 kb on + strand, within Psyr_3292 at 3939.879 kb on + strand, within Psyr_3292 at 3939.880 kb on - strand, within Psyr_3292 at 3940.073 kb on - strand at 3940.166 kb on + strand at 3940.209 kb on + strand at 3940.210 kb on - strand at 3940.210 kb on - strand at 3940.561 kb on + strand, within Psyr_3293 at 3940.817 kb on - strand at 3940.915 kb on + strand, within Psyr_3294 at 3940.916 kb on - strand, within Psyr_3294 at 3940.916 kb on - strand, within Psyr_3294 at 3940.916 kb on - strand, within Psyr_3294 at 3940.916 kb on - strand, within Psyr_3294 at 3941.362 kb on + strand, within Psyr_3294 at 3941.473 kb on + strand, within Psyr_3294 at 3941.474 kb on - strand, within Psyr_3294 at 3942.323 kb on - strand, within Psyr_3294 at 3942.477 kb on + strand at 3942.478 kb on - strand at 3942.662 kb on + strand at 3942.728 kb on - strand at 3942.728 kb on - strand at 3942.785 kb on - strand at 3942.789 kb on + strand at 3942.789 kb on + strand at 3942.789 kb on + strand at 3942.789 kb on + strand at 3942.789 kb on + strand at 3942.789 kb on + strand at 3942.790 kb on - strand at 3942.790 kb on - strand at 3942.790 kb on - strand at 3942.795 kb on + strand at 3942.925 kb on - strand at 3942.925 kb on - strand at 3942.928 kb on - strand at 3942.981 kb on + strand at 3942.981 kb on + strand at 3942.981 kb on + strand at 3942.982 kb on - strand at 3942.982 kb on - strand at 3942.982 kb on - strand at 3942.982 kb on - strand at 3942.982 kb on - strand at 3943.179 kb on + strand, within Psyr_3295 at 3943.179 kb on + strand, within Psyr_3295 at 3943.179 kb on + strand, within Psyr_3295 at 3943.180 kb on - strand, within Psyr_3295 at 3943.180 kb on - strand, within Psyr_3295 at 3943.407 kb on + strand, within Psyr_3295 at 3943.408 kb on - strand, within Psyr_3295 at 3943.408 kb on - strand, within Psyr_3295 at 3943.408 kb on - strand, within Psyr_3295 at 3943.408 kb on - strand, within Psyr_3295 at 3943.408 kb on - strand, within Psyr_3295 at 3943.408 kb on - strand, within Psyr_3295 at 3943.408 kb on - strand, within Psyr_3295 at 3943.408 kb on - strand, within Psyr_3295 at 3943.525 kb on + strand, within Psyr_3295 at 3943.614 kb on + strand, within Psyr_3295
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 3,939,738 + Psyr_3292 0.24 -2.4 3,939,879 + Psyr_3292 0.56 -0.2 3,939,880 - Psyr_3292 0.56 -1.6 3,940,073 - +0.2 3,940,166 + +0.8 3,940,209 + -1.0 3,940,210 - +0.5 3,940,210 - +0.8 3,940,561 + Psyr_3293 0.81 -0.4 3,940,817 - +0.6 3,940,915 + Psyr_3294 0.11 +0.8 3,940,916 - Psyr_3294 0.11 -1.4 3,940,916 - Psyr_3294 0.11 +0.8 3,940,916 - Psyr_3294 0.11 -0.9 3,940,916 - Psyr_3294 0.11 -0.5 3,941,362 + Psyr_3294 0.34 -0.9 3,941,473 + Psyr_3294 0.40 +0.6 3,941,474 - Psyr_3294 0.40 +0.6 3,942,323 - Psyr_3294 0.84 -1.8 3,942,477 + -0.3 3,942,478 - +0.3 3,942,662 + +0.2 3,942,728 - -1.1 3,942,728 - +0.7 3,942,785 - +0.3 3,942,789 + +0.4 3,942,789 + +1.5 3,942,789 + -0.3 3,942,789 + -1.2 3,942,789 + -0.3 3,942,789 + +0.4 3,942,790 - +2.2 3,942,790 - -0.8 3,942,790 - +0.1 3,942,795 + -1.6 3,942,925 - +0.6 3,942,925 - -0.7 3,942,928 - +0.3 3,942,981 + +0.3 3,942,981 + -0.3 3,942,981 + +0.4 3,942,982 - -0.4 3,942,982 - +0.2 3,942,982 - +0.5 3,942,982 - +0.8 3,942,982 - +1.4 3,943,179 + Psyr_3295 0.18 +0.1 3,943,179 + Psyr_3295 0.18 -0.3 3,943,179 + Psyr_3295 0.18 +2.4 3,943,180 - Psyr_3295 0.18 +1.2 3,943,180 - Psyr_3295 0.18 +0.5 3,943,407 + Psyr_3295 0.30 +0.9 3,943,408 - Psyr_3295 0.30 +0.2 3,943,408 - Psyr_3295 0.30 +0.7 3,943,408 - Psyr_3295 0.30 +0.2 3,943,408 - Psyr_3295 0.30 -0.6 3,943,408 - Psyr_3295 0.30 -2.1 3,943,408 - Psyr_3295 0.30 -0.3 3,943,408 - Psyr_3295 0.30 -2.4 3,943,408 - Psyr_3295 0.30 +0.3 3,943,525 + Psyr_3295 0.36 -0.0 3,943,614 + Psyr_3295 0.41 +0.1
Or see this region's nucleotide sequence