Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3164

Experiment: KB with Avocatin A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3163 and Psyr_3164 are separated by 483 nucleotidesPsyr_3164 and Psyr_RNA47 are separated by 121 nucleotidesPsyr_RNA47 and Psyr_3165 are separated by 142 nucleotides Psyr_3163: Psyr_3163 - epralysin, Metallo peptidase, MEROPS family M10B, at 3,791,203 to 3,792,633 _3163 Psyr_3164: Psyr_3164 - Protein of unknown function UPF0005, at 3,793,117 to 3,793,788 _3164 Psyr_RNA47: Psyr_RNA47 - tRNA-Ser, at 3,793,910 to 3,793,997 _RNA47 Psyr_3165: Psyr_3165 - transcriptional regulator, LysR family, at 3,794,140 to 3,795,048 _3165 Position (kb) 3793 3794Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3792.143 kb on + strand, within Psyr_3163at 3792.143 kb on + strand, within Psyr_3163at 3792.144 kb on - strand, within Psyr_3163at 3792.144 kb on - strand, within Psyr_3163at 3792.144 kb on - strand, within Psyr_3163at 3792.144 kb on - strand, within Psyr_3163at 3792.161 kb on + strand, within Psyr_3163at 3792.203 kb on + strand, within Psyr_3163at 3792.239 kb on + strand, within Psyr_3163at 3792.239 kb on + strand, within Psyr_3163at 3792.239 kb on + strand, within Psyr_3163at 3792.240 kb on - strand, within Psyr_3163at 3792.240 kb on - strand, within Psyr_3163at 3792.240 kb on - strand, within Psyr_3163at 3792.255 kb on + strand, within Psyr_3163at 3792.255 kb on + strand, within Psyr_3163at 3792.255 kb on + strand, within Psyr_3163at 3792.255 kb on + strand, within Psyr_3163at 3792.256 kb on - strand, within Psyr_3163at 3792.256 kb on - strand, within Psyr_3163at 3792.256 kb on - strand, within Psyr_3163at 3792.256 kb on - strand, within Psyr_3163at 3792.329 kb on - strand, within Psyr_3163at 3792.416 kb on + strand, within Psyr_3163at 3792.416 kb on + strand, within Psyr_3163at 3792.416 kb on + strand, within Psyr_3163at 3792.416 kb on + strand, within Psyr_3163at 3792.416 kb on + strand, within Psyr_3163at 3792.417 kb on - strand, within Psyr_3163at 3792.417 kb on - strand, within Psyr_3163at 3792.417 kb on - strand, within Psyr_3163at 3792.417 kb on - strand, within Psyr_3163at 3792.477 kb on + strand, within Psyr_3163at 3792.477 kb on + strand, within Psyr_3163at 3792.477 kb on + strand, within Psyr_3163at 3792.477 kb on + strand, within Psyr_3163at 3792.479 kb on + strand, within Psyr_3163at 3792.479 kb on + strand, within Psyr_3163at 3792.480 kb on - strand, within Psyr_3163at 3792.504 kb on - strandat 3792.545 kb on + strandat 3792.546 kb on - strandat 3792.672 kb on - strandat 3792.672 kb on - strandat 3792.820 kb on - strandat 3792.846 kb on + strandat 3792.846 kb on + strandat 3792.931 kb on + strandat 3792.932 kb on - strandat 3793.114 kb on - strandat 3793.170 kb on + strandat 3793.172 kb on + strandat 3793.172 kb on + strandat 3793.172 kb on + strandat 3793.173 kb on - strandat 3793.173 kb on - strandat 3793.173 kb on - strandat 3793.173 kb on - strandat 3793.173 kb on - strandat 3793.181 kb on - strandat 3793.184 kb on + strandat 3793.184 kb on + strandat 3793.184 kb on + strandat 3793.184 kb on + strandat 3793.185 kb on - strand, within Psyr_3164at 3793.185 kb on - strand, within Psyr_3164at 3793.185 kb on - strand, within Psyr_3164at 3793.185 kb on - strand, within Psyr_3164at 3793.185 kb on - strand, within Psyr_3164at 3793.185 kb on - strand, within Psyr_3164at 3793.185 kb on - strand, within Psyr_3164at 3793.208 kb on + strand, within Psyr_3164at 3793.208 kb on + strand, within Psyr_3164at 3793.208 kb on + strand, within Psyr_3164at 3793.208 kb on + strand, within Psyr_3164at 3793.209 kb on - strand, within Psyr_3164at 3793.209 kb on - strand, within Psyr_3164at 3793.209 kb on - strand, within Psyr_3164at 3793.209 kb on - strand, within Psyr_3164at 3793.209 kb on - strand, within Psyr_3164at 3793.209 kb on - strand, within Psyr_3164at 3793.209 kb on - strand, within Psyr_3164at 3793.209 kb on - strand, within Psyr_3164at 3793.212 kb on + strand, within Psyr_3164at 3793.408 kb on + strand, within Psyr_3164at 3793.408 kb on + strand, within Psyr_3164at 3793.408 kb on + strand, within Psyr_3164at 3793.409 kb on - strand, within Psyr_3164at 3793.409 kb on - strand, within Psyr_3164at 3793.409 kb on - strand, within Psyr_3164at 3793.409 kb on - strand, within Psyr_3164at 3793.409 kb on - strand, within Psyr_3164at 3793.412 kb on + strand, within Psyr_3164at 3793.413 kb on - strand, within Psyr_3164at 3793.413 kb on - strand, within Psyr_3164at 3793.604 kb on + strand, within Psyr_3164at 3793.604 kb on + strand, within Psyr_3164at 3793.605 kb on - strand, within Psyr_3164at 3793.605 kb on - strand, within Psyr_3164at 3793.605 kb on - strand, within Psyr_3164at 3793.605 kb on - strand, within Psyr_3164at 3793.605 kb on - strand, within Psyr_3164at 3793.709 kb on + strand, within Psyr_3164at 3793.713 kb on + strand, within Psyr_3164at 3793.714 kb on - strand, within Psyr_3164at 3793.764 kb on + strandat 3794.100 kb on + strandat 3794.103 kb on - strandat 3794.119 kb on + strandat 3794.326 kb on - strand, within Psyr_3165at 3794.458 kb on + strand, within Psyr_3165at 3794.458 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.644 kb on + strand, within Psyr_3165at 3794.648 kb on + strand, within Psyr_3165at 3794.648 kb on + strand, within Psyr_3165at 3794.648 kb on + strand, within Psyr_3165at 3794.648 kb on + strand, within Psyr_3165at 3794.649 kb on - strand, within Psyr_3165at 3794.649 kb on - strand, within Psyr_3165at 3794.680 kb on - strand, within Psyr_3165at 3794.710 kb on + strand, within Psyr_3165at 3794.710 kb on + strand, within Psyr_3165at 3794.710 kb on + strand, within Psyr_3165at 3794.722 kb on + strand, within Psyr_3165at 3794.722 kb on + strand, within Psyr_3165at 3794.723 kb on - strand, within Psyr_3165at 3794.723 kb on - strand, within Psyr_3165at 3794.723 kb on - strand, within Psyr_3165at 3794.723 kb on - strand, within Psyr_3165

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM
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3,792,143 + Psyr_3163 0.66 +1.2
3,792,143 + Psyr_3163 0.66 +0.2
3,792,144 - Psyr_3163 0.66 -0.9
3,792,144 - Psyr_3163 0.66 -0.1
3,792,144 - Psyr_3163 0.66 +0.5
3,792,144 - Psyr_3163 0.66 +0.4
3,792,161 + Psyr_3163 0.67 -0.5
3,792,203 + Psyr_3163 0.70 +0.8
3,792,239 + Psyr_3163 0.72 +1.4
3,792,239 + Psyr_3163 0.72 +1.2
3,792,239 + Psyr_3163 0.72 +0.0
3,792,240 - Psyr_3163 0.72 +3.2
3,792,240 - Psyr_3163 0.72 -1.3
3,792,240 - Psyr_3163 0.72 -1.8
3,792,255 + Psyr_3163 0.74 +0.4
3,792,255 + Psyr_3163 0.74 -0.0
3,792,255 + Psyr_3163 0.74 -0.6
3,792,255 + Psyr_3163 0.74 -1.1
3,792,256 - Psyr_3163 0.74 -0.5
3,792,256 - Psyr_3163 0.74 -0.0
3,792,256 - Psyr_3163 0.74 +1.2
3,792,256 - Psyr_3163 0.74 +0.5
3,792,329 - Psyr_3163 0.79 +3.5
3,792,416 + Psyr_3163 0.85 -1.7
3,792,416 + Psyr_3163 0.85 -0.4
3,792,416 + Psyr_3163 0.85 +0.2
3,792,416 + Psyr_3163 0.85 +0.1
3,792,416 + Psyr_3163 0.85 -1.4
3,792,417 - Psyr_3163 0.85 -1.2
3,792,417 - Psyr_3163 0.85 -0.0
3,792,417 - Psyr_3163 0.85 +2.2
3,792,417 - Psyr_3163 0.85 +0.2
3,792,477 + Psyr_3163 0.89 -0.0
3,792,477 + Psyr_3163 0.89 -1.3
3,792,477 + Psyr_3163 0.89 +0.5
3,792,477 + Psyr_3163 0.89 -0.7
3,792,479 + Psyr_3163 0.89 +0.6
3,792,479 + Psyr_3163 0.89 -2.4
3,792,480 - Psyr_3163 0.89 -0.6
3,792,504 - -1.8
3,792,545 + +0.2
3,792,546 - +1.0
3,792,672 - +1.0
3,792,672 - -0.4
3,792,820 - -0.5
3,792,846 + -1.1
3,792,846 + -0.5
3,792,931 + +1.4
3,792,932 - -1.1
3,793,114 - +1.4
3,793,170 + +0.0
3,793,172 + +0.9
3,793,172 + -2.3
3,793,172 + -1.2
3,793,173 - -0.5
3,793,173 - -2.1
3,793,173 - +0.7
3,793,173 - +2.2
3,793,173 - -0.1
3,793,181 - +2.8
3,793,184 + -1.1
3,793,184 + +0.2
3,793,184 + -0.7
3,793,184 + -1.3
3,793,185 - Psyr_3164 0.10 -0.0
3,793,185 - Psyr_3164 0.10 +2.5
3,793,185 - Psyr_3164 0.10 +0.5
3,793,185 - Psyr_3164 0.10 +1.2
3,793,185 - Psyr_3164 0.10 +1.8
3,793,185 - Psyr_3164 0.10 +0.1
3,793,185 - Psyr_3164 0.10 -1.2
3,793,208 + Psyr_3164 0.14 +0.4
3,793,208 + Psyr_3164 0.14 -0.9
3,793,208 + Psyr_3164 0.14 +0.0
3,793,208 + Psyr_3164 0.14 -1.8
3,793,209 - Psyr_3164 0.14 +3.2
3,793,209 - Psyr_3164 0.14 -0.4
3,793,209 - Psyr_3164 0.14 -0.4
3,793,209 - Psyr_3164 0.14 -0.1
3,793,209 - Psyr_3164 0.14 +0.2
3,793,209 - Psyr_3164 0.14 -0.8
3,793,209 - Psyr_3164 0.14 +1.6
3,793,209 - Psyr_3164 0.14 -0.6
3,793,212 + Psyr_3164 0.14 -2.0
3,793,408 + Psyr_3164 0.43 -1.2
3,793,408 + Psyr_3164 0.43 -0.9
3,793,408 + Psyr_3164 0.43 -0.0
3,793,409 - Psyr_3164 0.43 -0.4
3,793,409 - Psyr_3164 0.43 +0.2
3,793,409 - Psyr_3164 0.43 -1.3
3,793,409 - Psyr_3164 0.43 +2.7
3,793,409 - Psyr_3164 0.43 +1.1
3,793,412 + Psyr_3164 0.44 -0.8
3,793,413 - Psyr_3164 0.44 -1.4
3,793,413 - Psyr_3164 0.44 -1.5
3,793,604 + Psyr_3164 0.72 +0.0
3,793,604 + Psyr_3164 0.72 -0.1
3,793,605 - Psyr_3164 0.73 +3.5
3,793,605 - Psyr_3164 0.73 +0.8
3,793,605 - Psyr_3164 0.73 -0.3
3,793,605 - Psyr_3164 0.73 -2.6
3,793,605 - Psyr_3164 0.73 -2.3
3,793,709 + Psyr_3164 0.88 +0.9
3,793,713 + Psyr_3164 0.89 -2.6
3,793,714 - Psyr_3164 0.89 +0.2
3,793,764 + +0.7
3,794,100 + +0.4
3,794,103 - -2.2
3,794,119 + +1.4
3,794,326 - Psyr_3165 0.20 +0.3
3,794,458 + Psyr_3165 0.35 +0.3
3,794,458 + Psyr_3165 0.35 +1.2
3,794,461 + Psyr_3165 0.35 -0.3
3,794,461 + Psyr_3165 0.35 +2.2
3,794,461 + Psyr_3165 0.35 +0.8
3,794,461 + Psyr_3165 0.35 +0.0
3,794,461 + Psyr_3165 0.35 +0.5
3,794,461 + Psyr_3165 0.35 -0.6
3,794,461 + Psyr_3165 0.35 +1.0
3,794,461 + Psyr_3165 0.35 -0.5
3,794,461 + Psyr_3165 0.35 +2.6
3,794,644 + Psyr_3165 0.55 +2.0
3,794,648 + Psyr_3165 0.56 +2.2
3,794,648 + Psyr_3165 0.56 -0.8
3,794,648 + Psyr_3165 0.56 -1.0
3,794,648 + Psyr_3165 0.56 +1.5
3,794,649 - Psyr_3165 0.56 -1.2
3,794,649 - Psyr_3165 0.56 -0.2
3,794,680 - Psyr_3165 0.59 -3.0
3,794,710 + Psyr_3165 0.63 -0.2
3,794,710 + Psyr_3165 0.63 +1.2
3,794,710 + Psyr_3165 0.63 -0.8
3,794,722 + Psyr_3165 0.64 +0.6
3,794,722 + Psyr_3165 0.64 +0.2
3,794,723 - Psyr_3165 0.64 +1.3
3,794,723 - Psyr_3165 0.64 -1.5
3,794,723 - Psyr_3165 0.64 +1.2
3,794,723 - Psyr_3165 0.64 -2.5

Or see this region's nucleotide sequence