Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1280

Experiment: KB with Avocatin A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1279 and Psyr_1280 are separated by 12 nucleotidesPsyr_1280 and Psyr_1281 are separated by 171 nucleotides Psyr_1279: Psyr_1279 - CBS:Transporter-associated region, at 1,445,063 to 1,446,310 _1279 Psyr_1280: Psyr_1280 - Cytochrome c assembly protein, at 1,446,323 to 1,447,177 _1280 Psyr_1281: Psyr_1281 - signal recognition particle subunit FFH/SRP54 (srp54), at 1,447,349 to 1,448,725 _1281 Position (kb) 1446 1447 1448Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1445.380 kb on + strand, within Psyr_1279at 1445.502 kb on + strand, within Psyr_1279at 1445.502 kb on + strand, within Psyr_1279at 1445.511 kb on + strand, within Psyr_1279at 1445.617 kb on - strand, within Psyr_1279at 1445.617 kb on - strand, within Psyr_1279at 1445.731 kb on + strand, within Psyr_1279at 1445.809 kb on + strand, within Psyr_1279at 1445.810 kb on - strand, within Psyr_1279at 1445.904 kb on + strand, within Psyr_1279at 1445.904 kb on + strand, within Psyr_1279at 1445.904 kb on + strand, within Psyr_1279at 1445.904 kb on + strand, within Psyr_1279at 1445.904 kb on + strand, within Psyr_1279at 1445.905 kb on - strand, within Psyr_1279at 1446.003 kb on + strand, within Psyr_1279at 1446.003 kb on + strand, within Psyr_1279at 1446.003 kb on + strand, within Psyr_1279at 1446.003 kb on + strand, within Psyr_1279at 1446.003 kb on + strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.064 kb on - strand, within Psyr_1279at 1446.072 kb on + strand, within Psyr_1279at 1446.073 kb on - strand, within Psyr_1279at 1446.124 kb on + strand, within Psyr_1279at 1446.124 kb on + strand, within Psyr_1279at 1446.124 kb on + strand, within Psyr_1279at 1446.366 kb on + strandat 1446.367 kb on - strandat 1446.416 kb on - strand, within Psyr_1280at 1446.667 kb on - strand, within Psyr_1280at 1446.742 kb on + strand, within Psyr_1280at 1446.743 kb on - strand, within Psyr_1280at 1446.812 kb on + strand, within Psyr_1280at 1446.812 kb on + strand, within Psyr_1280at 1446.812 kb on + strand, within Psyr_1280at 1446.812 kb on + strand, within Psyr_1280at 1446.813 kb on - strand, within Psyr_1280at 1446.813 kb on - strand, within Psyr_1280at 1446.828 kb on - strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.084 kb on - strand, within Psyr_1280at 1447.084 kb on - strand, within Psyr_1280at 1447.084 kb on - strand, within Psyr_1280at 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.177 kb on + strandat 1447.177 kb on + strandat 1447.177 kb on + strandat 1447.177 kb on + strandat 1447.178 kb on - strandat 1447.178 kb on - strandat 1447.244 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM
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1,445,380 + Psyr_1279 0.25 -0.6
1,445,502 + Psyr_1279 0.35 -0.5
1,445,502 + Psyr_1279 0.35 +0.2
1,445,511 + Psyr_1279 0.36 -0.2
1,445,617 - Psyr_1279 0.44 +0.3
1,445,617 - Psyr_1279 0.44 -0.1
1,445,731 + Psyr_1279 0.54 +1.3
1,445,809 + Psyr_1279 0.60 +1.2
1,445,810 - Psyr_1279 0.60 +0.1
1,445,904 + Psyr_1279 0.67 +3.0
1,445,904 + Psyr_1279 0.67 +1.1
1,445,904 + Psyr_1279 0.67 +0.9
1,445,904 + Psyr_1279 0.67 -2.4
1,445,904 + Psyr_1279 0.67 -0.7
1,445,905 - Psyr_1279 0.67 +0.9
1,446,003 + Psyr_1279 0.75 +0.8
1,446,003 + Psyr_1279 0.75 -0.7
1,446,003 + Psyr_1279 0.75 -0.4
1,446,003 + Psyr_1279 0.75 -0.3
1,446,003 + Psyr_1279 0.75 +0.6
1,446,004 - Psyr_1279 0.75 -2.3
1,446,004 - Psyr_1279 0.75 +0.4
1,446,004 - Psyr_1279 0.75 +0.6
1,446,004 - Psyr_1279 0.75 -0.4
1,446,064 - Psyr_1279 0.80 -2.2
1,446,072 + Psyr_1279 0.81 -1.4
1,446,073 - Psyr_1279 0.81 -0.4
1,446,124 + Psyr_1279 0.85 -0.0
1,446,124 + Psyr_1279 0.85 +0.3
1,446,124 + Psyr_1279 0.85 +0.1
1,446,366 + -0.8
1,446,367 - +1.5
1,446,416 - Psyr_1280 0.11 -0.1
1,446,667 - Psyr_1280 0.40 +1.2
1,446,742 + Psyr_1280 0.49 +0.1
1,446,743 - Psyr_1280 0.49 -0.3
1,446,812 + Psyr_1280 0.57 +1.4
1,446,812 + Psyr_1280 0.57 -0.6
1,446,812 + Psyr_1280 0.57 -1.0
1,446,812 + Psyr_1280 0.57 +0.5
1,446,813 - Psyr_1280 0.57 -1.4
1,446,813 - Psyr_1280 0.57 +1.2
1,446,828 - Psyr_1280 0.59 +0.7
1,447,083 + Psyr_1280 0.89 -1.0
1,447,083 + Psyr_1280 0.89 +1.3
1,447,083 + Psyr_1280 0.89 +0.0
1,447,083 + Psyr_1280 0.89 +0.2
1,447,084 - Psyr_1280 0.89 -1.0
1,447,084 - Psyr_1280 0.89 +2.8
1,447,084 - Psyr_1280 0.89 -0.3
1,447,135 + +0.9
1,447,135 + +0.3
1,447,135 + +2.7
1,447,135 + -1.2
1,447,135 + +0.1
1,447,135 + +1.0
1,447,135 + -0.2
1,447,136 - +1.2
1,447,136 - -0.5
1,447,136 - -2.5
1,447,136 - -0.7
1,447,136 - -1.1
1,447,177 + +1.0
1,447,177 + -0.2
1,447,177 + -1.1
1,447,177 + -0.4
1,447,178 - -1.1
1,447,178 - +0.5
1,447,244 + -1.2

Or see this region's nucleotide sequence