Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0039

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
40,551	+		Psyr_0036	0.88	+1.2
40,551	+		Psyr_0036	0.88	-0.5
40,552	-		Psyr_0036	0.88	-1.3
40,552	-		Psyr_0036	0.88	+2.5
40,552	-		Psyr_0036	0.88	-0.5
40,581	+				-0.3
40,581	+				-0.5
40,581	+				-1.0
40,581	+				+0.5
40,581	+				+0.2
40,581	+				-0.3
40,581	+				-0.4
40,581	+				+0.1
40,581	+				+0.6
40,582	-				+0.2
40,582	-				+0.1
40,582	-				+0.0
40,582	-				+0.4
40,584	+				+1.8
40,585	-				+0.1
40,585	-				-0.5
40,720	+				-0.4
40,720	+				+0.7
40,720	+				-0.7
40,720	+				+0.1
40,720	+				-1.3
40,720	+				+0.5
40,720	+				+0.2
40,720	+				+0.5
40,721	-				+1.0
40,721	-				+1.9
40,721	-				-0.9
40,721	-				-0.8
40,721	-				-0.5
40,774	+				-1.1
40,774	+				-1.5
40,775	-				+0.6
40,775	-				-0.7
40,775	-				+2.5
40,775	-				+0.3
40,969	+				+4.0
40,969	+				-1.0
40,969	+				+0.2
40,969	+				+0.5
41,016	+				+0.9
41,030	+				-2.6
41,031	-				+0.8
41,117	+				+0.8
41,144	+				+1.1
41,145	-		Psyr_0038	0.10	+0.2
41,145	-		Psyr_0038	0.10	-0.5
41,385	-				-0.4
41,542	+				+1.1
41,542	+				-0.1
41,542	+				-0.6
41,542	+				-1.4
41,542	+				-0.6
41,542	+				-0.4
41,542	+				-1.1
41,542	+				-1.1
41,542	+				+1.0
41,542	+				-0.3
41,542	+				+0.7
41,543	-				-2.2
41,543	-				+1.6
41,543	-				+1.9
41,543	-				-0.6
41,543	-				+1.2
41,543	-				+1.7
41,543	-				+0.1
41,543	-				+0.5
41,543	-				+0.8
41,543	-				-1.5
41,555	+				-0.2
41,656	-		Psyr_0039	0.17	+4.5
41,755	+		Psyr_0039	0.27	+0.7
41,773	+		Psyr_0039	0.29	-0.1
41,773	+		Psyr_0039	0.29	-0.7
41,773	+		Psyr_0039	0.29	-0.2
41,774	-		Psyr_0039	0.29	+0.5
41,827	+		Psyr_0039	0.34	+1.5
41,827	+		Psyr_0039	0.34	+0.3
41,827	+		Psyr_0039	0.34	-0.3
41,827	+		Psyr_0039	0.34	-0.4
41,828	-		Psyr_0039	0.34	+0.2
41,828	-		Psyr_0039	0.34	+0.4
41,828	-		Psyr_0039	0.34	+0.7
41,893	+		Psyr_0039	0.41	-0.4
41,894	-		Psyr_0039	0.41	-0.5
42,050	-		Psyr_0039	0.56	+0.5
42,050	-		Psyr_0039	0.56	+0.3
42,361	+		Psyr_0039	0.88	+0.3
42,361	+		Psyr_0039	0.88	-0.2
42,361	+		Psyr_0039	0.88	+0.3
42,361	+		Psyr_0039	0.88	+0.0
42,361	+		Psyr_0039	0.88	-2.9
42,362	-		Psyr_0039	0.88	-1.2
42,486	-				+0.9
42,587	-				+0.9
42,644	-				-0.9
42,797	+		Psyr_0040	0.23	-0.4
42,798	-		Psyr_0040	0.23	+0.8
42,963	+		Psyr_0040	0.61	+0.6
42,964	-		Psyr_0040	0.62	+0.7
42,964	-		Psyr_0040	0.62	+1.6
42,964	-		Psyr_0040	0.62	-0.5
42,964	-		Psyr_0040	0.62	+1.5
43,114	+				-0.8
43,114	+				+2.5
43,114	+				-0.5
43,115	-				-0.7
43,115	-				+1.8
43,115	-				+0.4
43,115	-				+0.9
43,115	-				+1.0
43,169	+				-0.0
43,169	+				+0.2
43,169	+				-1.8
43,169	+				-2.6
43,169	+				+0.3
43,178	+				+3.5
43,178	+				+0.6
43,178	+				+0.4
43,179	-				+0.1
43,179	-				+1.7
43,179	-				-0.8
43,181	-				+0.1
43,181	-				-1.3
43,181	-				+0.9
43,181	-				-0.7
43,230	+				-0.9
43,230	+				-0.0
43,231	-				+0.4
43,231	-				-0.5
43,259	+				+0.0
43,374	+		Psyr_0041	0.54	-1.4
43,374	+		Psyr_0041	0.54	+1.0
43,375	-		Psyr_0041	0.54	-0.1
43,375	-		Psyr_0041	0.54	+1.0
43,461	+				+1.8
43,461	+				+0.1
43,461	+				-1.2
43,462	-				+0.5
43,462	-				-2.4
43,462	-				-0.0
43,462	-				+0.5
43,462	-				+2.1