Strain Fitness in Pseudomonas putida KT2440 around PP_5747

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0155 and PP_5747 are separated by 2 nucleotidesPP_5747 and PP_0156 are separated by 11 nucleotides PP_0155: PP_0155 - pyridine nucleotide transhydrogenase, beta subunit, at 164,020 to 165,456 _0155 PP_5747: PP_5747 - pyridine nucleotide transhydrogenase subunit alpha, at 165,459 to 165,773 _5747 PP_0156: PP_0156 - pyridine nucleotide transhydrogenase subunit alpha, at 165,785 to 166,906 _0156 Position (kb) 165 166Strain fitness (log2 ratio) -1 0 1 2at 164.648 kb on + strand, within PP_0155at 164.648 kb on + strand, within PP_0155at 164.648 kb on + strand, within PP_0155at 164.649 kb on - strand, within PP_0155at 164.649 kb on - strand, within PP_0155at 164.649 kb on - strand, within PP_0155at 164.675 kb on - strand, within PP_0155at 164.747 kb on + strand, within PP_0155at 164.799 kb on + strand, within PP_0155at 164.799 kb on + strand, within PP_0155at 164.855 kb on + strand, within PP_0155at 164.855 kb on + strand, within PP_0155at 164.855 kb on + strand, within PP_0155at 164.856 kb on - strand, within PP_0155at 164.856 kb on - strand, within PP_0155at 164.856 kb on - strand, within PP_0155at 164.856 kb on - strand, within PP_0155at 164.856 kb on - strand, within PP_0155at 164.942 kb on - strand, within PP_0155at 164.972 kb on + strand, within PP_0155at 164.972 kb on + strand, within PP_0155at 165.018 kb on + strand, within PP_0155at 165.018 kb on + strand, within PP_0155at 165.018 kb on + strand, within PP_0155at 165.019 kb on - strand, within PP_0155at 165.019 kb on - strand, within PP_0155at 165.019 kb on - strand, within PP_0155at 165.260 kb on + strand, within PP_0155at 165.260 kb on + strand, within PP_0155at 165.297 kb on + strand, within PP_0155at 165.297 kb on + strand, within PP_0155at 165.297 kb on + strand, within PP_0155at 165.298 kb on - strand, within PP_0155at 165.298 kb on - strand, within PP_0155at 165.298 kb on - strand, within PP_0155at 165.298 kb on - strand, within PP_0155at 165.299 kb on + strand, within PP_0155at 165.299 kb on + strand, within PP_0155at 165.300 kb on - strand, within PP_0155at 165.300 kb on - strand, within PP_0155at 165.428 kb on + strandat 165.428 kb on + strandat 165.429 kb on - strandat 165.460 kb on + strandat 165.461 kb on - strandat 165.461 kb on - strandat 165.703 kb on + strand, within PP_5747at 165.704 kb on - strand, within PP_5747at 165.712 kb on + strand, within PP_5747at 165.712 kb on + strand, within PP_5747at 165.712 kb on + strand, within PP_5747at 165.712 kb on + strand, within PP_5747at 165.712 kb on + strand, within PP_5747at 165.712 kb on + strand, within PP_5747at 165.712 kb on + strand, within PP_5747at 165.713 kb on - strand, within PP_5747at 165.713 kb on - strand, within PP_5747at 165.713 kb on - strand, within PP_5747at 165.713 kb on - strand, within PP_5747at 165.713 kb on - strand, within PP_5747at 165.743 kb on - strandat 165.787 kb on - strandat 165.918 kb on + strand, within PP_0156at 165.918 kb on + strand, within PP_0156at 165.919 kb on - strand, within PP_0156at 166.400 kb on + strand, within PP_0156at 166.464 kb on + strand, within PP_0156at 166.464 kb on + strand, within PP_0156at 166.465 kb on - strand, within PP_0156at 166.465 kb on - strand, within PP_0156at 166.465 kb on - strand, within PP_0156at 166.494 kb on + strand, within PP_0156at 166.494 kb on + strand, within PP_0156at 166.495 kb on - strand, within PP_0156at 166.495 kb on - strand, within PP_0156at 166.580 kb on - strand, within PP_0156at 166.700 kb on + strand, within PP_0156at 166.716 kb on + strand, within PP_0156at 166.716 kb on + strand, within PP_0156

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-3-buten-1-ol 0.25 vol% (C)
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164,648 + PP_0155 0.44 +0.5
164,648 + PP_0155 0.44 -0.3
164,648 + PP_0155 0.44 +0.8
164,649 - PP_0155 0.44 -0.5
164,649 - PP_0155 0.44 -1.2
164,649 - PP_0155 0.44 +0.8
164,675 - PP_0155 0.46 +0.3
164,747 + PP_0155 0.51 +0.6
164,799 + PP_0155 0.54 +0.9
164,799 + PP_0155 0.54 -0.9
164,855 + PP_0155 0.58 +0.2
164,855 + PP_0155 0.58 +0.3
164,855 + PP_0155 0.58 +0.3
164,856 - PP_0155 0.58 -0.4
164,856 - PP_0155 0.58 +0.0
164,856 - PP_0155 0.58 -0.7
164,856 - PP_0155 0.58 +0.1
164,856 - PP_0155 0.58 +0.2
164,942 - PP_0155 0.64 +0.6
164,972 + PP_0155 0.66 -0.4
164,972 + PP_0155 0.66 +0.7
165,018 + PP_0155 0.69 +0.2
165,018 + PP_0155 0.69 +0.2
165,018 + PP_0155 0.69 -0.4
165,019 - PP_0155 0.70 -0.3
165,019 - PP_0155 0.70 +0.2
165,019 - PP_0155 0.70 +2.7
165,260 + PP_0155 0.86 +0.3
165,260 + PP_0155 0.86 -0.0
165,297 + PP_0155 0.89 +0.6
165,297 + PP_0155 0.89 +0.1
165,297 + PP_0155 0.89 +0.1
165,298 - PP_0155 0.89 -0.2
165,298 - PP_0155 0.89 +0.5
165,298 - PP_0155 0.89 -0.5
165,298 - PP_0155 0.89 +0.4
165,299 + PP_0155 0.89 -0.5
165,299 + PP_0155 0.89 -0.6
165,300 - PP_0155 0.89 +0.1
165,300 - PP_0155 0.89 -0.2
165,428 + +0.5
165,428 + -1.0
165,429 - +0.1
165,460 + +2.3
165,461 - -0.6
165,461 - -0.0
165,703 + PP_5747 0.77 +0.4
165,704 - PP_5747 0.78 +0.9
165,712 + PP_5747 0.80 +0.9
165,712 + PP_5747 0.80 +0.7
165,712 + PP_5747 0.80 -0.3
165,712 + PP_5747 0.80 +0.1
165,712 + PP_5747 0.80 +0.2
165,712 + PP_5747 0.80 +0.5
165,712 + PP_5747 0.80 +1.7
165,713 - PP_5747 0.81 +1.4
165,713 - PP_5747 0.81 +0.6
165,713 - PP_5747 0.81 +0.2
165,713 - PP_5747 0.81 -0.3
165,713 - PP_5747 0.81 -0.3
165,743 - +1.2
165,787 - +0.3
165,918 + PP_0156 0.12 +0.1
165,918 + PP_0156 0.12 -0.2
165,919 - PP_0156 0.12 -0.6
166,400 + PP_0156 0.55 -0.3
166,464 + PP_0156 0.61 +0.0
166,464 + PP_0156 0.61 -0.4
166,465 - PP_0156 0.61 -1.1
166,465 - PP_0156 0.61 +0.5
166,465 - PP_0156 0.61 +0.3
166,494 + PP_0156 0.63 +0.2
166,494 + PP_0156 0.63 +0.2
166,495 - PP_0156 0.63 -0.0
166,495 - PP_0156 0.63 -0.3
166,580 - PP_0156 0.71 +0.5
166,700 + PP_0156 0.82 +0.5
166,716 + PP_0156 0.83 -0.1
166,716 + PP_0156 0.83 -0.7

Or see this region's nucleotide sequence