Strain Fitness in Pseudomonas putida KT2440 around PP_5182

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5181 and PP_5182 are separated by 168 nucleotidesPP_5182 and PP_5183 are separated by 48 nucleotides PP_5181: PP_5181 - spermidine/putrescine ABC transporter - periplasmic subunit, at 5,908,123 to 5,909,220 _5181 PP_5182: PP_5182 - polyamine:pyruvate transaminase, at 5,909,389 to 5,910,750 _5182 PP_5183: PP_5183 - glutamylpolyamine synthetase, at 5,910,799 to 5,912,157 _5183 Position (kb) 5909 5910 5911Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5908.407 kb on - strand, within PP_5181at 5908.407 kb on - strand, within PP_5181at 5908.407 kb on - strand, within PP_5181at 5908.413 kb on + strand, within PP_5181at 5908.439 kb on + strand, within PP_5181at 5908.439 kb on + strand, within PP_5181at 5908.439 kb on + strand, within PP_5181at 5908.440 kb on - strand, within PP_5181at 5908.440 kb on - strand, within PP_5181at 5908.440 kb on - strand, within PP_5181at 5908.517 kb on - strand, within PP_5181at 5908.550 kb on + strand, within PP_5181at 5908.551 kb on - strand, within PP_5181at 5908.568 kb on + strand, within PP_5181at 5908.569 kb on - strand, within PP_5181at 5908.569 kb on - strand, within PP_5181at 5908.655 kb on + strand, within PP_5181at 5908.656 kb on - strand, within PP_5181at 5908.805 kb on + strand, within PP_5181at 5908.805 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.940 kb on + strand, within PP_5181at 5908.941 kb on - strand, within PP_5181at 5909.057 kb on + strand, within PP_5181at 5909.057 kb on + strand, within PP_5181at 5909.057 kb on + strand, within PP_5181at 5909.058 kb on - strand, within PP_5181at 5909.058 kb on - strand, within PP_5181at 5909.114 kb on + strandat 5909.115 kb on - strandat 5909.115 kb on - strandat 5909.127 kb on + strandat 5909.127 kb on + strandat 5909.127 kb on + strandat 5909.127 kb on + strandat 5909.127 kb on + strandat 5909.128 kb on - strandat 5909.128 kb on - strandat 5909.128 kb on - strandat 5909.128 kb on - strandat 5909.129 kb on + strandat 5909.130 kb on - strandat 5909.130 kb on - strandat 5909.130 kb on - strandat 5909.215 kb on - strandat 5909.224 kb on + strandat 5909.224 kb on + strandat 5909.224 kb on + strandat 5909.224 kb on + strandat 5909.245 kb on + strandat 5909.246 kb on - strandat 5909.246 kb on - strandat 5909.305 kb on + strandat 5909.330 kb on + strandat 5909.352 kb on + strandat 5909.353 kb on - strandat 5909.353 kb on - strandat 5909.353 kb on - strandat 5909.353 kb on - strandat 5909.353 kb on - strandat 5909.360 kb on + strandat 5909.361 kb on - strandat 5909.361 kb on - strandat 5909.379 kb on + strandat 5909.467 kb on + strandat 5909.867 kb on + strand, within PP_5182at 5909.867 kb on + strand, within PP_5182at 5909.867 kb on + strand, within PP_5182at 5909.868 kb on - strand, within PP_5182at 5909.918 kb on + strand, within PP_5182at 5909.919 kb on - strand, within PP_5182at 5909.919 kb on - strand, within PP_5182at 5909.921 kb on + strand, within PP_5182at 5909.921 kb on + strand, within PP_5182at 5909.994 kb on - strand, within PP_5182at 5909.994 kb on - strand, within PP_5182at 5910.189 kb on - strand, within PP_5182at 5910.348 kb on - strand, within PP_5182at 5910.417 kb on + strand, within PP_5182at 5910.417 kb on + strand, within PP_5182at 5910.417 kb on + strand, within PP_5182at 5910.418 kb on - strand, within PP_5182at 5910.498 kb on - strand, within PP_5182at 5910.571 kb on + strand, within PP_5182at 5910.571 kb on + strand, within PP_5182at 5910.572 kb on - strand, within PP_5182at 5910.572 kb on - strand, within PP_5182at 5910.674 kb on + strandat 5910.674 kb on + strandat 5910.763 kb on + strandat 5910.876 kb on + strandat 5910.876 kb on + strandat 5910.911 kb on + strandat 5910.912 kb on - strandat 5910.992 kb on + strand, within PP_5183at 5911.026 kb on + strand, within PP_5183at 5911.047 kb on - strand, within PP_5183at 5911.058 kb on - strand, within PP_5183at 5911.058 kb on - strand, within PP_5183at 5911.079 kb on + strand, within PP_5183at 5911.593 kb on - strand, within PP_5183at 5911.593 kb on - strand, within PP_5183at 5911.727 kb on + strand, within PP_5183at 5911.728 kb on - strand, within PP_5183

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-3-buten-1-ol 0.25 vol% (C)
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5,908,407 - PP_5181 0.26 -0.4
5,908,407 - PP_5181 0.26 +1.3
5,908,407 - PP_5181 0.26 -0.5
5,908,413 + PP_5181 0.26 +0.3
5,908,439 + PP_5181 0.29 +0.3
5,908,439 + PP_5181 0.29 +0.2
5,908,439 + PP_5181 0.29 -1.2
5,908,440 - PP_5181 0.29 -1.7
5,908,440 - PP_5181 0.29 +0.2
5,908,440 - PP_5181 0.29 +0.3
5,908,517 - PP_5181 0.36 +0.4
5,908,550 + PP_5181 0.39 +1.3
5,908,551 - PP_5181 0.39 -0.6
5,908,568 + PP_5181 0.41 +0.4
5,908,569 - PP_5181 0.41 -0.0
5,908,569 - PP_5181 0.41 +0.3
5,908,655 + PP_5181 0.48 -0.9
5,908,656 - PP_5181 0.49 +1.3
5,908,805 + PP_5181 0.62 -0.0
5,908,805 + PP_5181 0.62 +1.7
5,908,830 + PP_5181 0.64 -0.7
5,908,830 + PP_5181 0.64 +0.0
5,908,830 + PP_5181 0.64 +0.6
5,908,830 + PP_5181 0.64 -0.4
5,908,830 + PP_5181 0.64 -0.2
5,908,831 - PP_5181 0.64 -0.0
5,908,831 - PP_5181 0.64 -0.7
5,908,831 - PP_5181 0.64 -0.2
5,908,831 - PP_5181 0.64 +0.4
5,908,831 - PP_5181 0.64 -0.7
5,908,832 + PP_5181 0.65 +0.0
5,908,832 + PP_5181 0.65 +1.4
5,908,832 + PP_5181 0.65 -0.1
5,908,832 + PP_5181 0.65 -0.2
5,908,832 + PP_5181 0.65 +0.1
5,908,832 + PP_5181 0.65 +0.2
5,908,832 + PP_5181 0.65 +0.1
5,908,832 + PP_5181 0.65 +0.0
5,908,832 + PP_5181 0.65 +1.3
5,908,832 + PP_5181 0.65 +0.2
5,908,833 - PP_5181 0.65 -0.1
5,908,833 - PP_5181 0.65 +0.3
5,908,833 - PP_5181 0.65 +0.4
5,908,833 - PP_5181 0.65 -1.5
5,908,833 - PP_5181 0.65 -0.4
5,908,833 - PP_5181 0.65 +0.2
5,908,940 + PP_5181 0.74 -1.2
5,908,941 - PP_5181 0.74 -0.3
5,909,057 + PP_5181 0.85 -0.3
5,909,057 + PP_5181 0.85 -0.1
5,909,057 + PP_5181 0.85 -0.3
5,909,058 - PP_5181 0.85 +0.8
5,909,058 - PP_5181 0.85 +2.8
5,909,114 + -0.5
5,909,115 - +0.8
5,909,115 - +0.6
5,909,127 + +0.8
5,909,127 + -0.4
5,909,127 + +0.3
5,909,127 + -0.3
5,909,127 + -0.6
5,909,128 - +0.1
5,909,128 - +0.8
5,909,128 - -0.6
5,909,128 - +0.9
5,909,129 + +0.4
5,909,130 - +0.3
5,909,130 - -0.8
5,909,130 - +0.3
5,909,215 - +0.3
5,909,224 + +0.2
5,909,224 + +0.8
5,909,224 + +0.0
5,909,224 + -0.7
5,909,245 + +0.2
5,909,246 - -0.1
5,909,246 - -2.6
5,909,305 + -0.2
5,909,330 + +0.2
5,909,352 + -0.1
5,909,353 - +0.1
5,909,353 - +0.1
5,909,353 - +0.6
5,909,353 - +0.2
5,909,353 - -1.9
5,909,360 + -0.1
5,909,361 - -2.8
5,909,361 - -0.4
5,909,379 + +0.5
5,909,467 + +0.7
5,909,867 + PP_5182 0.35 -0.8
5,909,867 + PP_5182 0.35 -0.0
5,909,867 + PP_5182 0.35 +0.1
5,909,868 - PP_5182 0.35 +0.8
5,909,918 + PP_5182 0.39 -0.2
5,909,919 - PP_5182 0.39 -0.3
5,909,919 - PP_5182 0.39 +0.8
5,909,921 + PP_5182 0.39 -0.1
5,909,921 + PP_5182 0.39 -0.7
5,909,994 - PP_5182 0.44 +0.9
5,909,994 - PP_5182 0.44 -0.3
5,910,189 - PP_5182 0.59 +1.4
5,910,348 - PP_5182 0.70 +0.5
5,910,417 + PP_5182 0.75 -0.1
5,910,417 + PP_5182 0.75 -0.0
5,910,417 + PP_5182 0.75 +0.1
5,910,418 - PP_5182 0.76 +0.3
5,910,498 - PP_5182 0.81 -0.2
5,910,571 + PP_5182 0.87 +0.1
5,910,571 + PP_5182 0.87 +0.7
5,910,572 - PP_5182 0.87 +0.8
5,910,572 - PP_5182 0.87 -0.5
5,910,674 + +0.1
5,910,674 + +0.8
5,910,763 + +0.9
5,910,876 + +0.5
5,910,876 + +0.4
5,910,911 + +0.6
5,910,912 - +0.9
5,910,992 + PP_5183 0.14 +0.4
5,911,026 + PP_5183 0.17 +0.5
5,911,047 - PP_5183 0.18 -0.6
5,911,058 - PP_5183 0.19 -1.2
5,911,058 - PP_5183 0.19 +0.4
5,911,079 + PP_5183 0.21 +1.1
5,911,593 - PP_5183 0.58 +0.0
5,911,593 - PP_5183 0.58 -0.3
5,911,727 + PP_5183 0.68 -0.2
5,911,728 - PP_5183 0.68 -0.6

Or see this region's nucleotide sequence