Strain Fitness in Pseudomonas putida KT2440 around PP_5072

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.25 vol% (C)
5,787,993	+		PP_5071	0.14	-0.4
5,787,993	+		PP_5071	0.14	-1.4
5,787,993	+		PP_5071	0.14	-0.8
5,787,994	-		PP_5071	0.14	-0.2
5,788,215	+		PP_5071	0.38	-0.6
5,788,215	+		PP_5071	0.38	-0.4
5,788,358	+		PP_5071	0.54	-0.1
5,788,358	+		PP_5071	0.54	-0.1
5,788,556	+		PP_5071	0.76	-0.1
5,788,557	-		PP_5071	0.76	+0.2
5,788,618	+		PP_5071	0.83	+0.2
5,788,618	+		PP_5071	0.83	-0.6
5,788,618	+		PP_5071	0.83	+0.2
5,788,746	+				-0.0
5,788,747	-				+0.3
5,788,747	-				+0.1
5,788,747	-				-0.0
5,788,841	+				+0.2
5,788,842	-				-0.2
5,789,018	+		PP_5072	0.14	-0.6
5,789,019	-		PP_5072	0.14	+0.5
5,789,025	+		PP_5072	0.14	-0.2
5,789,025	+		PP_5072	0.14	-0.3
5,789,026	-		PP_5072	0.14	+0.0
5,789,026	-		PP_5072	0.14	+0.6
5,789,026	-		PP_5072	0.14	-0.5
5,789,242	-		PP_5072	0.31	-0.4
5,789,303	+		PP_5072	0.36	-1.5
5,789,303	+		PP_5072	0.36	-0.4
5,789,303	+		PP_5072	0.36	-0.4
5,789,304	-		PP_5072	0.36	-0.3
5,789,304	-		PP_5072	0.36	-0.7
5,789,304	-		PP_5072	0.36	-0.0
5,789,304	-				+0.2
5,789,354	+		PP_5072	0.40	-0.6
5,789,354	+		PP_5072	0.40	-0.5
5,789,355	-		PP_5072	0.40	-2.2
5,789,406	+		PP_5072	0.44	-0.1
5,789,406	+		PP_5072	0.44	+0.2
5,789,406	+		PP_5072	0.44	+0.3
5,789,407	-		PP_5072	0.44	-0.3
5,789,407	-		PP_5072	0.44	-0.8
5,789,639	+		PP_5072	0.62	-0.6
5,789,640	-		PP_5072	0.62	-0.2
5,789,711	+		PP_5072	0.68	-0.1
5,789,711	+		PP_5072	0.68	-0.1
5,789,712	-		PP_5072	0.68	-1.0
5,789,722	+		PP_5072	0.69	-0.4
5,789,723	-		PP_5072	0.69	-1.0
5,789,726	+		PP_5072	0.69	-0.6
5,789,726	+		PP_5072	0.69	-0.0
5,789,726	+		PP_5072	0.69	+0.2
5,789,727	-		PP_5072	0.69	-1.1
5,789,727	-		PP_5072	0.69	-0.5
5,789,727	-		PP_5072	0.69	-0.7
5,789,791	+		PP_5072	0.74	-0.7
5,789,792	-		PP_5072	0.74	-0.8
5,789,792	-		PP_5072	0.74	+0.3
5,789,792	-		PP_5072	0.74	-0.5
5,789,799	+		PP_5072	0.75	-0.1
5,789,799	+		PP_5072	0.75	-1.6
5,789,957	+		PP_5072	0.87	+0.4
5,789,957	+		PP_5072	0.87	-0.9
5,789,973	-		PP_5072	0.88	-1.1
5,789,973	-		PP_5072	0.88	-0.2
5,790,209	+				+1.0
5,790,210	-				-0.2
5,790,210	-				-0.7
5,790,210	-				+1.4
5,790,352	+		PP_5073	0.40	-0.6
5,790,523	+		PP_5073	0.82	+0.5
5,790,634	+				-0.3