Strain Fitness in Pseudomonas putida KT2440 around PP_4549

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.25 vol% (C)
5,170,312	+		PP_4548	0.41	-0.3
5,170,312	+		PP_4548	0.41	+0.3
5,170,313	-		PP_4548	0.41	+0.7
5,170,516	+		PP_4548	0.57	+0.8
5,170,516	+		PP_4548	0.57	-0.0
5,170,517	-		PP_4548	0.57	+0.7
5,170,517	-		PP_4548	0.57	-0.6
5,170,636	+		PP_4548	0.66	-1.2
5,170,637	-		PP_4548	0.66	+0.9
5,170,637	-		PP_4548	0.66	+0.1
5,170,660	+		PP_4548	0.68	-1.1
5,170,660	+		PP_4548	0.68	-1.3
5,170,661	-		PP_4548	0.68	-1.2
5,170,661	-		PP_4548	0.68	+0.1
5,170,663	+		PP_4548	0.68	+0.3
5,170,663	+		PP_4548	0.68	-0.4
5,170,664	-		PP_4548	0.68	-1.5
5,170,711	+		PP_4548	0.72	-0.6
5,170,711	+		PP_4548	0.72	+0.2
5,170,712	-		PP_4548	0.72	+0.2
5,170,712	-		PP_4548	0.72	-0.1
5,170,712	-		PP_4548	0.72	+0.7
5,170,712	-		PP_4548	0.72	-1.0
5,170,877	-		PP_4548	0.84	+0.5
5,170,888	+		PP_4548	0.85	+0.5
5,171,051	-				-0.4
5,171,051	-				-0.8
5,171,051	-				-0.5
5,171,051	-				-0.1
5,171,051	-				+0.3
5,171,054	-				+0.1
5,171,054	-				-0.0
5,171,126	+				-2.5
5,171,126	+				+0.2
5,171,126	+				-0.3
5,171,126	+				+0.5
5,171,127	-				+0.1
5,171,127	-				-0.0
5,171,383	+				-0.1
5,171,560	+		PP_4549	0.18	+0.2
5,171,561	-		PP_4549	0.18	+0.2
5,171,562	+		PP_4549	0.18	+0.0
5,171,562	+		PP_4549	0.18	-0.4
5,171,562	+		PP_4549	0.18	+0.8
5,171,562	+		PP_4549	0.18	+0.5
5,171,562	+		PP_4549	0.18	-0.1
5,171,563	-		PP_4549	0.18	+1.0
5,171,563	-		PP_4549	0.18	+0.0
5,171,563	-		PP_4549	0.18	+0.5
5,171,563	-		PP_4549	0.18	-0.4
5,171,567	-		PP_4549	0.18	-1.9
5,171,618	-		PP_4549	0.21	-0.8
5,171,618	-		PP_4549	0.21	+0.8
5,171,708	-		PP_4549	0.26	+1.6
5,171,817	-		PP_4549	0.33	-0.5
5,171,887	+		PP_4549	0.37	+0.0
5,171,887	+				-0.6
5,171,888	-		PP_4549	0.37	-0.7
5,171,940	+		PP_4549	0.40	+0.4
5,171,940	+		PP_4549	0.40	-0.1
5,171,940	+		PP_4549	0.40	-0.1
5,171,940	+		PP_4549	0.40	-0.5
5,171,940	+		PP_4549	0.40	+0.0
5,171,940	+		PP_4549	0.40	+0.7
5,171,941	-		PP_4549	0.40	+0.4
5,171,941	-		PP_4549	0.40	+0.2
5,172,161	+		PP_4549	0.53	+0.7
5,172,161	+		PP_4549	0.53	+0.9
5,172,161	+		PP_4549	0.53	-1.4
5,172,162	-		PP_4549	0.53	+0.3
5,172,169	+		PP_4549	0.53	-0.3
5,172,169	+		PP_4549	0.53	-0.1
5,172,169	+		PP_4549	0.53	-0.0
5,172,169	+		PP_4549	0.53	-0.5
5,172,169	+		PP_4549	0.53	-1.6
5,172,170	-		PP_4549	0.53	+0.3
5,172,170	-		PP_4549	0.53	+2.2
5,172,170	-		PP_4549	0.53	+0.1
5,172,178	+		PP_4549	0.54	-1.1
5,172,178	+		PP_4549	0.54	+0.6
5,172,179	-		PP_4549	0.54	-0.1
5,172,319	+		PP_4549	0.62	-0.7
5,172,424	+		PP_4549	0.68	+0.1
5,172,448	+		PP_4549	0.70	+1.0
5,172,448	+		PP_4549	0.70	+1.1
5,172,448	+		PP_4549	0.70	-0.0
5,172,449	-		PP_4549	0.70	-0.8
5,172,635	-		PP_4549	0.81	+1.1
5,172,752	+		PP_4549	0.88	+0.4
5,172,793	+				-0.3
5,172,793	+				-0.0
5,172,794	-				+0.1
5,172,794	-				+0.6
5,172,794	-				+0.8
5,172,806	-				-0.6
5,172,813	-				-0.0
5,172,813	-				+0.4
5,172,831	-				+0.1
5,172,873	+				-0.1
5,172,873	+				-0.8
5,172,873	+				-0.5
5,172,873	+				-0.5
5,172,874	-				-0.3
5,172,874	-				+1.2
5,172,931	+				-0.5
5,172,932	-				+0.6
5,172,932	-				-2.1
5,172,935	+				-0.3
5,172,935	+				-0.1
5,172,935	+				-1.1
5,172,936	-				+0.1
5,172,936	-				-0.5
5,172,936	-				-1.1
5,173,015	+				+1.4
5,173,016	-				-0.6
5,173,016	-				+0.3
5,173,021	+				+0.4
5,173,022	-				-0.7
5,173,022	-				+1.2
5,173,073	-				+0.8
5,173,183	+				+0.0
5,173,183	+				+0.7
5,173,184	-				+1.0
5,173,192	-				+0.1
5,173,192	-				-0.1
5,173,193	+				-0.8
5,173,193	+				+0.8
5,173,193	+				+1.1
5,173,193	+				-0.1
5,173,204	-				+0.3
5,173,240	+				+1.1
5,173,240	+				+0.3
5,173,240	+				-0.1
5,173,254	+				+1.0
5,173,255	-				+0.4
5,173,255	-				+0.7
5,173,297	+				-1.2
5,173,297	+				-0.3
5,173,298	-				+0.0
5,173,298	-				+0.7
5,173,298	-				-0.3
5,173,298	-				-0.1
5,173,299	+				+0.3
5,173,300	-				-1.1
5,173,375	+				+0.1
5,173,375	+				-2.5
5,173,375	+				+0.1
5,173,376	-				-1.5
5,173,382	+				-1.7
5,173,407	-				+1.0
5,173,407	-				-0.8
5,173,556	+		PP_4550	0.16	+0.7
5,173,557	-		PP_4550	0.16	-0.3
5,173,852	-		PP_4550	0.33	-0.1