Strain Fitness in Pseudomonas putida KT2440 around PP_3697

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.25 vol% (C)
4,214,007	-		PP_3696	0.23	+1.4
4,214,066	+		PP_3696	0.27	-0.1
4,214,066	+		PP_3696	0.27	+0.4
4,214,066	+		PP_3696	0.27	+1.1
4,214,067	-		PP_3696	0.28	+0.2
4,214,074	+		PP_3696	0.28	-0.5
4,214,074	+		PP_3696	0.28	+1.9
4,214,075	-		PP_3696	0.28	-0.4
4,214,075	-		PP_3696	0.28	+0.1
4,214,083	-				+0.2
4,214,196	+		PP_3696	0.38	+0.1
4,214,196	+		PP_3696	0.38	+0.7
4,214,196	+		PP_3696	0.38	-1.0
4,214,196	+		PP_3696	0.38	-1.8
4,214,197	-		PP_3696	0.38	+0.3
4,214,197	-		PP_3696	0.38	+0.3
4,214,216	+		PP_3696	0.40	+0.5
4,214,217	-		PP_3696	0.40	+0.2
4,214,217	-		PP_3696	0.40	+0.3
4,214,231	+		PP_3696	0.41	+0.0
4,214,276	-		PP_3696	0.45	-0.3
4,214,315	+		PP_3696	0.48	+0.1
4,214,315	+		PP_3696	0.48	-0.1
4,214,315	+		PP_3696	0.48	+0.0
4,214,315	+		PP_3696	0.48	-1.3
4,214,315	+		PP_3696	0.48	+0.3
4,214,315	+		PP_3696	0.48	-0.3
4,214,315	+		PP_3696	0.48	+0.5
4,214,316	-		PP_3696	0.48	-0.6
4,214,316	-		PP_3696	0.48	-0.7
4,214,316	-		PP_3696	0.48	-0.8
4,214,316	-		PP_3696	0.48	+0.1
4,214,374	-		PP_3696	0.53	+0.3
4,214,386	+		PP_3696	0.54	-1.0
4,214,386	+		PP_3696	0.54	-0.7
4,214,387	-		PP_3696	0.54	-1.7
4,214,387	-		PP_3696	0.54	+0.4
4,214,458	-		PP_3696	0.60	-0.2
4,214,458	-		PP_3696	0.60	-0.1
4,214,458	-		PP_3696	0.60	+0.4
4,214,473	+		PP_3696	0.61	+0.3
4,214,473	+		PP_3696	0.61	+0.4
4,214,473	+		PP_3696	0.61	+0.1
4,214,474	-		PP_3696	0.61	+0.0
4,214,518	+		PP_3696	0.64	-0.0
4,214,582	+		PP_3696	0.70	+0.1
4,214,582	+		PP_3696	0.70	-0.9
4,214,583	-		PP_3696	0.70	-1.1
4,214,583	-		PP_3696	0.70	+0.2
4,214,584	+		PP_3696	0.70	+0.6
4,214,584	+		PP_3696	0.70	-0.3
4,214,584	+		PP_3696	0.70	+0.5
4,214,584	+		PP_3696	0.70	+0.2
4,214,585	-		PP_3696	0.70	-0.9
4,214,585	-		PP_3696	0.70	+0.7
4,214,708	+		PP_3696	0.80	+0.3
4,214,708	+		PP_3696	0.80	+0.2
4,214,731	+		PP_3696	0.82	-0.9
4,214,732	-		PP_3696	0.82	-1.8
4,214,853	+				-0.8
4,214,854	-				+0.2
4,214,959	+				-0.3
4,214,959	+				-0.3
4,214,960	-				+0.2
4,215,007	+				-0.2
4,215,030	+				-0.2
4,215,030	+				+0.4
4,215,030	+				+0.2
4,215,030	+				+0.1
4,215,031	-				+0.4
4,215,031	-				+0.9
4,215,094	+				-0.7
4,215,095	-				+0.8
4,215,119	+				+0.3
4,215,119	+				+0.2
4,215,119	+				-0.2
4,215,119	+				-1.0
4,215,120	-				+0.3
4,215,120	-				+0.3
4,215,153	+				-0.6
4,215,153	+				-0.4
4,215,154	-				+0.5
4,215,203	-		PP_3697	0.12	+0.1
4,215,203	-		PP_3697	0.12	+0.3
4,215,221	+		PP_3697	0.13	+1.0
4,215,248	+		PP_3697	0.14	+0.4
4,215,248	+		PP_3697	0.14	+0.5
4,215,248	+		PP_3697	0.14	+0.4
4,215,248	+		PP_3697	0.14	+0.7
4,215,249	-		PP_3697	0.14	+1.1
4,215,249	-		PP_3697	0.14	+0.9
4,215,249	-		PP_3697	0.14	+0.5
4,215,288	-		PP_3697	0.16	+0.6
4,215,462	+		PP_3697	0.24	+0.8
4,215,462	+				+0.5
4,215,462	+		PP_3697	0.24	+0.2
4,215,463	-		PP_3697	0.24	+0.2
4,215,463	-		PP_3697	0.24	-0.0
4,215,579	+		PP_3697	0.30	+0.2
4,215,580	-		PP_3697	0.30	+0.2
4,215,580	-		PP_3697	0.30	-0.1
4,215,581	+		PP_3697	0.30	-0.5
4,215,581	+		PP_3697	0.30	-0.0
4,215,581	+		PP_3697	0.30	+0.2
4,215,581	+		PP_3697	0.30	+0.1
4,215,581	+		PP_3697	0.30	-1.3
4,215,582	-		PP_3697	0.30	-0.5
4,215,582	-		PP_3697	0.30	+0.3
4,215,706	+		PP_3697	0.36	+1.2
4,215,743	+		PP_3697	0.38	+0.2
4,215,744	-		PP_3697	0.38	-0.4
4,215,744	-		PP_3697	0.38	-0.3
4,215,785	+		PP_3697	0.40	-0.8
4,215,785	+		PP_3697	0.40	-0.6
4,215,786	-		PP_3697	0.40	+1.7
4,215,786	-		PP_3697	0.40	+0.1
4,215,846	+		PP_3697	0.43	+0.5
4,215,846	+		PP_3697	0.43	-0.3
4,215,846	+		PP_3697	0.43	+1.3
4,215,943	+		PP_3697	0.47	+1.0
4,215,944	-		PP_3697	0.47	-1.1
4,215,955	+		PP_3697	0.48	+0.3
4,215,955	+		PP_3697	0.48	+2.0
4,215,956	-		PP_3697	0.48	+0.3
4,215,956	-		PP_3697	0.48	-0.4
4,215,959	+		PP_3697	0.48	+0.3
4,215,959	+		PP_3697	0.48	+0.9
4,215,959	+		PP_3697	0.48	-0.0
4,215,959	+		PP_3697	0.48	-0.4
4,215,960	-		PP_3697	0.48	-0.6
4,215,960	-		PP_3697	0.48	-2.1
4,216,005	+		PP_3697	0.50	+1.1
4,216,006	-		PP_3697	0.50	-1.4
4,216,006	-		PP_3697	0.50	+0.5
4,216,040	-		PP_3697	0.52	+0.6
4,216,047	+		PP_3697	0.52	+1.0
4,216,048	-		PP_3697	0.52	-0.5
4,216,048	-		PP_3697	0.52	+0.5
4,216,048	-		PP_3697	0.52	+0.1
4,216,048	-		PP_3697	0.52	+0.1
4,216,048	-		PP_3697	0.52	-0.7
4,216,048	-		PP_3697	0.52	+0.2
4,216,244	-		PP_3697	0.62	+0.2
4,216,494	+		PP_3697	0.74	+0.2
4,216,494	+		PP_3697	0.74	+0.9
4,216,494	+		PP_3697	0.74	+0.1
4,216,495	-		PP_3697	0.74	+0.4
4,216,495	-		PP_3697	0.74	+0.0
4,216,498	+		PP_3697	0.74	-0.2
4,216,498	+		PP_3697	0.74	+1.2
4,216,499	-		PP_3697	0.74	+0.3
4,216,518	+		PP_3697	0.75	+0.2
4,216,539	-		PP_3697	0.76	+0.8
4,216,539	-		PP_3697	0.76	+0.0
4,216,579	+		PP_3697	0.78	+1.5
4,216,580	-		PP_3697	0.78	+0.5
4,216,580	-		PP_3697	0.78	-0.3
4,216,580	-		PP_3697	0.78	+0.5
4,216,580	-		PP_3697	0.78	+0.3
4,216,580	-		PP_3697	0.78	-0.5
4,216,737	+		PP_3697	0.85	+1.2
4,216,737	+		PP_3697	0.85	+0.7
4,216,738	-		PP_3697	0.85	+0.7
4,216,738	-		PP_3697	0.85	+0.8
4,216,806	+		PP_3697	0.89	-0.1
4,216,806	+		PP_3697	0.89	+0.5
4,216,807	-		PP_3697	0.89	-0.0
4,216,807	-		PP_3697	0.89	+0.4
4,216,810	+		PP_3697	0.89	+0.2
4,216,811	-		PP_3697	0.89	-0.5
4,216,811	-		PP_3697	0.89	-0.1
4,216,862	-				-0.8
4,216,862	-				+0.4
4,216,956	+				-0.1
4,216,956	+				-0.4
4,216,956	+				-0.3
4,216,956	+				+0.4
4,216,956	+				+0.5
4,216,957	-				+1.6
4,216,957	-				+0.2
4,216,957	-				-1.3
4,216,959	-				+0.5
4,216,971	+				-0.1
4,216,972	-				+0.3
4,216,981	+				+0.2
4,216,996	+				-0.3
4,216,996	+				-0.2
4,216,996	+				+1.8
4,216,997	-				+0.1
4,216,997	-				-0.1
4,216,997	-				+3.2
4,216,997	-				-0.5
4,217,020	+				-0.5
4,217,020	+				+0.1
4,217,021	-				+0.9
4,217,021	-				+0.1
4,217,021	-				+0.6
4,217,174	+		PP_5622	0.18	-1.0
4,217,175	-		PP_5622	0.18	-0.6
4,217,175	-		PP_5622	0.18	+0.7
4,217,175	-		PP_5622	0.18	+0.2
4,217,175	-		PP_5622	0.18	+0.9
4,217,191	+		PP_5622	0.20	-0.3
4,217,191	+		PP_5622	0.20	-0.5
4,217,191	+		PP_5622	0.20	-0.8
4,217,191	+		PP_5622	0.20	+0.3
4,217,192	-		PP_5622	0.20	+0.3
4,217,192	-				+0.0
4,217,192	-		PP_5622	0.20	-1.0
4,217,192	-		PP_5622	0.20	-0.3
4,217,192	-		PP_5622	0.20	-0.2
4,217,194	+		PP_5622	0.21	+0.0
4,217,194	+		PP_5622	0.21	+0.4
4,217,195	-		PP_5622	0.21	+0.6
4,217,195	-		PP_5622	0.21	-0.0
4,217,195	-		PP_5622	0.21	-1.1
4,217,195	-		PP_5622	0.21	-0.7
4,217,195	-		PP_5622	0.21	+0.8
4,217,195	-		PP_5622	0.21	-0.1
4,217,198	+		PP_5622	0.21	-0.1
4,217,198	+		PP_5622	0.21	-0.1
4,217,199	-		PP_5622	0.21	+0.5
4,217,199	-		PP_5622	0.21	+1.4
4,217,199	-		PP_5622	0.21	+0.4
4,217,199	-		PP_5622	0.21	+0.1
4,217,199	-		PP_5622	0.21	-0.6
4,217,289	+		PP_5622	0.33	-0.3
4,217,290	-		PP_5622	0.33	+0.5
4,217,290	-		PP_5622	0.33	-0.1
4,217,290	-		PP_5622	0.33	-0.0
4,217,293	+		PP_5622	0.34	-1.5
4,217,293	+		PP_5622	0.34	+1.2
4,217,293	+		PP_5622	0.34	-0.3
4,217,293	+		PP_5622	0.34	+0.6
4,217,293	+		PP_5622	0.34	+0.5
4,217,293	+		PP_5622	0.34	-0.5
4,217,293	+		PP_5622	0.34	+0.3
4,217,293	+		PP_5622	0.34	+0.0
4,217,294	-		PP_5622	0.34	-0.8
4,217,294	-		PP_5622	0.34	-0.1
4,217,294	-		PP_5622	0.34	+0.3
4,217,294	-		PP_5622	0.34	+1.7
4,217,294	-		PP_5622	0.34	-0.1
4,217,294	-		PP_5622	0.34	+0.3
4,217,294	-		PP_5622	0.34	-0.7
4,217,294	-		PP_5622	0.34	+0.8
4,217,306	+		PP_5622	0.35	+0.3
4,217,307	-		PP_5622	0.35	-0.6
4,217,307	-		PP_5622	0.35	+0.2
4,217,307	-		PP_5622	0.35	-0.8
4,217,318	+		PP_5622	0.37	-0.2
4,217,318	+		PP_5622	0.37	-0.5
4,217,318	+		PP_5622	0.37	-0.3
4,217,319	-		PP_5622	0.37	+0.2
4,217,319	-		PP_5622	0.37	+0.4
4,217,422	+		PP_5622	0.51	-0.5
4,217,422	+		PP_5622	0.51	-0.2
4,217,422	+		PP_5622	0.51	+0.1
4,217,422	+		PP_5622	0.51	+1.6
4,217,422	+		PP_5622	0.51	+0.9
4,217,422	+		PP_5622	0.51	+0.3
4,217,422	+		PP_5622	0.51	-0.0
4,217,422	+		PP_5622	0.51	-0.4
4,217,422	+		PP_5622	0.51	-0.3
4,217,422	+		PP_5622	0.51	+0.2
4,217,422	+		PP_5622	0.51	-1.0
4,217,423	-		PP_5622	0.51	-0.5
4,217,423	-		PP_5622	0.51	+0.2
4,217,423	-		PP_5622	0.51	-1.0
4,217,423	-		PP_5622	0.51	-1.6
4,217,423	-		PP_5622	0.51	+0.6
4,217,423	-		PP_5622	0.51	+0.8
4,217,513	+		PP_5622	0.63	+0.8
4,217,552	+		PP_5622	0.68	+0.6
4,217,552	+		PP_5622	0.68	-0.1
4,217,552	+		PP_5622	0.68	-0.4
4,217,553	-		PP_5622	0.68	-0.7
4,217,553	-		PP_5622	0.68	+0.2
4,217,583	+		PP_5622	0.72	-0.9
4,217,583	+		PP_5622	0.72	+1.6
4,217,584	-		PP_5622	0.72	+0.6
4,217,625	+		PP_5622	0.78	+0.8
4,217,660	-		PP_5622	0.82	-0.7
4,217,856	+				-0.6
4,217,917	+				-0.3
4,217,917	+				+0.3
4,217,918	-				+0.2
4,217,918	-				+0.3
4,217,918	-				-0.2
4,217,918	-				+0.2
4,217,918	-				-0.3
4,217,987	-		PP_3698	0.13	+0.9