Strain Fitness in Pseudomonas putida KT2440 around PP_3622

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.25 vol% (C)
4,116,339	-		PP_3620	0.89	-1.9
4,116,397	-				-0.0
4,116,413	+				+0.4
4,116,414	-				+1.2
4,116,428	+				-0.6
4,116,505	-				-0.8
4,116,593	+				-0.3
4,116,704	-				-0.1
4,116,717	-				+2.0
4,116,717	-				+0.2
4,116,775	+				+0.1
4,116,801	+				+0.3
4,116,801	+				-1.4
4,116,801	+				+0.2
4,116,802	-				-1.0
4,116,802	-				-1.3
4,116,817	-				+0.9
4,116,863	+				-1.1
4,116,883	+				-0.3
4,116,883	+				+0.2
4,116,884	-				+0.5
4,116,884	-				+0.3
4,116,958	+		PP_3621	0.22	-0.4
4,116,958	+		PP_3621	0.22	-0.6
4,116,958	+		PP_3621	0.22	-0.4
4,116,958	+		PP_3621	0.22	-0.4
4,116,958	+		PP_3621	0.22	-0.9
4,116,959	-		PP_3621	0.23	+0.2
4,116,959	-		PP_3621	0.23	+0.3
4,117,258	+		PP_3621	0.88	-0.3
4,117,258	+		PP_3621	0.88	-1.1
4,117,258	+		PP_3621	0.88	+0.5
4,117,259	-		PP_3621	0.88	+0.8
4,117,423	+				+0.9
4,117,423	+				-0.1
4,117,423	+				+0.1
4,117,559	+		PP_3622	0.11	+0.8
4,117,559	+		PP_3622	0.11	-0.5
4,117,560	-		PP_3622	0.11	-0.1
4,117,669	-		PP_3622	0.16	-0.3
4,117,669	-		PP_3622	0.16	+0.1
4,117,728	+		PP_3622	0.18	-0.2
4,117,729	-		PP_3622	0.19	-0.1
4,117,802	-		PP_3622	0.22	-0.7
4,117,820	+				+2.0
4,117,832	+		PP_3622	0.23	+0.1
4,117,837	+		PP_3622	0.23	+0.2
4,117,837	+		PP_3622	0.23	-0.4
4,117,837	+		PP_3622	0.23	-0.8
4,117,837	+		PP_3622	0.23	+0.6
4,117,837	+		PP_3622	0.23	-0.3
4,117,837	+		PP_3622	0.23	+0.4
4,117,837	+		PP_3622	0.23	-0.3
4,117,837	+		PP_3622	0.23	+1.3
4,117,837	+		PP_3622	0.23	-0.1
4,117,838	-		PP_3622	0.23	-0.2
4,117,838	-		PP_3622	0.23	-0.3
4,117,838	-		PP_3622	0.23	-0.4
4,117,838	-		PP_3622	0.23	+0.7
4,117,838	-		PP_3622	0.23	-0.2
4,117,838	-		PP_3622	0.23	-0.1
4,117,840	+		PP_3622	0.23	+0.4
4,117,840	+		PP_3622	0.23	+0.1
4,117,840	+		PP_3622	0.23	+0.0
4,117,840	+		PP_3622	0.23	-0.2
4,117,840	+		PP_3622	0.23	-0.2
4,117,840	+		PP_3622	0.23	-0.9
4,117,840	+		PP_3622	0.23	+0.0
4,117,841	-		PP_3622	0.23	-0.6
4,117,841	-		PP_3622	0.23	+0.6
4,117,844	+		PP_3622	0.24	+0.1
4,117,845	-		PP_3622	0.24	-0.7
4,117,969	+		PP_3622	0.29	-0.2
4,118,013	+		PP_3622	0.31	-0.5
4,118,014	-		PP_3622	0.31	+0.4
4,118,014	-		PP_3622	0.31	+0.7
4,118,132	-		PP_3622	0.36	+1.9
4,118,132	-		PP_3622	0.36	+0.1
4,118,132	-		PP_3622	0.36	+0.7
4,118,132	-		PP_3622	0.36	+0.3
4,118,391	+		PP_3622	0.48	-1.1
4,118,392	-		PP_3622	0.48	+0.5
4,118,403	+		PP_3622	0.48	-0.4
4,118,598	+		PP_3622	0.57	-0.1
4,118,666	+		PP_3622	0.60	-0.3
4,118,667	-		PP_3622	0.60	+0.3
4,118,702	-		PP_3622	0.62	+0.3
4,118,702	-		PP_3622	0.62	+0.2
4,118,702	-		PP_3622	0.62	+1.5
4,118,868	+		PP_3622	0.69	+0.0
4,118,868	+		PP_3622	0.69	+0.3
4,118,901	+		PP_3622	0.70	+0.1
4,118,902	-		PP_3622	0.71	-0.1
4,118,929	-		PP_3622	0.72	-0.1
4,118,945	+		PP_3622	0.72	-0.2
4,118,946	-		PP_3622	0.72	+1.3
4,118,946	-		PP_3622	0.72	+0.4
4,118,968	-		PP_3622	0.73	-0.7
4,119,343	-				+0.4
4,119,372	+				+1.2
4,119,372	+				-0.3
4,119,660	+				+0.1
4,119,660	+				+0.1
4,119,660	+				-0.8
4,119,661	-				+0.2
4,119,741	+		PP_3623	0.12	-0.2
4,119,741	+		PP_3623	0.12	+0.1
4,119,777	-		PP_3623	0.14	-0.1
4,119,777	-		PP_3623	0.14	+0.2
4,119,885	+		PP_3623	0.22	-0.0
4,119,885	+		PP_3623	0.22	+0.2
4,119,885	+		PP_3623	0.22	-1.2
4,119,886	-		PP_3623	0.22	+0.0
4,120,008	+		PP_3623	0.31	+0.0
4,120,180	-		PP_3623	0.44	+0.3
4,120,180	-		PP_3623	0.44	+0.9
4,120,182	-		PP_3623	0.44	-0.3
4,120,217	+		PP_3623	0.47	+0.3
4,120,302	+		PP_3623	0.53	-0.9
4,120,302	+		PP_3623	0.53	+0.1
4,120,303	-		PP_3623	0.53	-0.2
4,120,303	-		PP_3623	0.53	-0.7
4,120,303	-		PP_3623	0.53	-1.0
4,120,303	-		PP_3623	0.53	-0.3
4,120,303	-		PP_3623	0.53	-0.3
4,120,405	+		PP_3623	0.61	-0.7
4,120,405	+		PP_3623	0.61	+0.6
4,120,405	+		PP_3623	0.61	+0.4
4,120,405	+		PP_3623	0.61	-0.0
4,120,405	+		PP_3623	0.61	+1.4
4,120,405	+		PP_3623	0.61	-0.6
4,120,406	-		PP_3623	0.61	-0.8
4,120,406	-		PP_3623	0.61	+0.2
4,120,406	-		PP_3623	0.61	-0.2
4,120,406	-		PP_3623	0.61	-0.5
4,120,407	+		PP_3623	0.61	-0.2
4,120,407	+		PP_3623	0.61	-0.5
4,120,407	+		PP_3623	0.61	-0.4
4,120,407	+		PP_3623	0.61	-0.3
4,120,408	-		PP_3623	0.61	-0.0
4,120,408	-		PP_3623	0.61	-1.0
4,120,408	-		PP_3623	0.61	-0.2