Strain Fitness in Pseudomonas putida KT2440 around PP_3599

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.25 vol% (C)
4,087,941	+		PP_3598	0.20	+0.8
4,087,941	+		PP_3598	0.20	-0.8
4,087,996	+		PP_3598	0.27	+0.2
4,088,035	+		PP_3598	0.32	-0.0
4,088,035	+		PP_3598	0.32	-0.3
4,088,192	-		PP_3598	0.51	-0.7
4,088,203	+		PP_3598	0.53	+0.1
4,088,204	-		PP_3598	0.53	-0.1
4,088,263	+		PP_3598	0.60	-0.7
4,088,264	-		PP_3598	0.60	+0.6
4,088,549	+				-0.8
4,088,802	+				-0.7
4,088,802	+				+0.0
4,088,802	+				-0.8
4,088,802	+				+0.1
4,088,802	+				-1.1
4,088,802	+				+1.2
4,088,802	+				+0.4
4,088,802	+				-2.0
4,088,802	+				+0.4
4,088,802	+				+0.0
4,088,802	+				+0.2
4,088,802	+				-0.0
4,088,802	+				+0.3
4,088,802	+				-0.6
4,088,802	+				-0.5
4,088,803	-				+0.0
4,088,803	-				-0.2
4,088,803	-				-0.6
4,088,803	-				+0.4
4,088,803	-				+0.4
4,088,803	-				+0.3
4,088,803	-				-0.1
4,088,803	-				-1.2
4,088,803	-				-0.4
4,088,803	-				+0.7
4,088,803	-				+0.0
4,088,803	-				+0.2
4,088,804	+				+0.6
4,088,804	+				-0.7
4,088,804	+				-0.7
4,088,804	+				+0.2
4,088,805	-				-0.7
4,088,805	-				+0.2
4,088,805	-				-0.1
4,088,805	-				+1.0
4,089,030	+		PP_3599	0.11	-1.7
4,089,030	+		PP_3599	0.11	+0.8
4,089,127	-		PP_3599	0.21	-0.3
4,089,273	+		PP_3599	0.37	+0.3
4,089,274	-		PP_3599	0.37	+1.5
4,089,274	-		PP_3599	0.37	+0.2
4,089,274	-		PP_3599	0.37	-1.4
4,089,355	-		PP_3599	0.46	+0.7
4,089,499	-		PP_3599	0.62	-0.3
4,089,528	+		PP_3599	0.65	+1.1
4,089,540	+		PP_3599	0.66	+0.3
4,089,540	+		PP_3599	0.66	-0.6
4,089,541	-		PP_3599	0.67	-0.1
4,089,541	-		PP_3599	0.67	+0.1
4,089,564	+		PP_3599	0.69	-0.8
4,089,564	+		PP_3599	0.69	-0.2
4,089,564	+		PP_3599	0.69	-0.4
4,089,565	-				+1.2
4,089,612	+		PP_3599	0.74	+0.8
4,089,613	-		PP_3599	0.74	+0.0
4,089,679	-		PP_3599	0.82	-0.7
4,089,750	+		PP_3599	0.89	-0.7
4,089,802	-				+0.1
4,089,902	+				-0.4
4,089,931	+				+0.7
4,089,931	+				-2.4
4,089,941	-				-0.0
4,089,941	-				-0.2
4,089,962	-				-0.1
4,089,981	-				-0.5
4,090,022	+				+0.1
4,090,022	+				+0.5
4,090,022	+				-0.9
4,090,023	-				+0.4
4,090,045	+				-0.6
4,090,090	-		PP_3600	0.10	-0.6
4,090,100	+		PP_3600	0.11	-0.1
4,090,100	+		PP_3600	0.11	-0.8
4,090,100	+		PP_3600	0.11	-0.4
4,090,100	+		PP_3600	0.11	-0.4
4,090,101	-				+0.2
4,090,124	-		PP_3600	0.13	-0.9
4,090,127	+		PP_3600	0.13	+1.2
4,090,128	-		PP_3600	0.13	-0.2
4,090,128	-		PP_3600	0.13	-0.1
4,090,128	-		PP_3600	0.13	-0.6
4,090,187	+		PP_3600	0.17	-1.4
4,090,529	+		PP_3600	0.42	+0.2
4,090,529	+		PP_3600	0.42	-0.4
4,090,529	+		PP_3600	0.42	+0.3
4,090,529	+		PP_3600	0.42	-0.2
4,090,529	+		PP_3600	0.42	-0.6
4,090,643	+		PP_3600	0.51	+0.6
4,090,643	+		PP_3600	0.51	-2.2
4,090,644	-		PP_3600	0.51	+0.7
4,090,683	+		PP_3600	0.54	+0.1
4,090,684	-		PP_3600	0.54	-0.5
4,090,685	+		PP_3600	0.54	-0.4
4,090,718	+		PP_3600	0.56	-0.1
4,090,719	-		PP_3600	0.56	+0.3
4,090,719	-		PP_3600	0.56	-0.9
4,090,719	-		PP_3600	0.56	-0.2
4,090,745	+		PP_3600	0.58	+0.2
4,090,746	-		PP_3600	0.58	+0.9
4,090,746	-		PP_3600	0.58	+0.9
4,090,819	+		PP_3600	0.64	-0.0