Strain Fitness in Pseudomonas putida KT2440 around PP_3213

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.25 vol% (C)
3,645,258	-		PP_3212	0.28	-0.7
3,645,287	+		PP_3212	0.31	-0.6
3,645,657	-		PP_3212	0.67	-0.8
3,645,657	-		PP_3212	0.67	+0.2
3,645,663	-		PP_3212	0.67	+0.8
3,645,680	+		PP_3212	0.69	-0.9
3,645,709	-		PP_3212	0.72	-0.6
3,645,758	+		PP_3212	0.77	+0.7
3,645,758	+		PP_3212	0.77	-1.0
3,645,786	+		PP_3212	0.79	-0.4
3,645,864	+		PP_3212	0.87	-0.7
3,645,864	+		PP_3212	0.87	-0.4
3,645,943	-				-0.1
3,645,957	-				+0.5
3,645,974	-				-0.2
3,645,996	+				-0.7
3,645,996	+				-0.3
3,645,996	+				+0.5
3,645,997	-				-0.3
3,646,027	+				+1.0
3,646,027	+				-0.7
3,646,028	-				-0.6
3,646,028	-				+0.1
3,646,028	-				-0.6
3,646,068	+				-1.0
3,646,068	+				+0.8
3,646,069	-				+0.2
3,646,427	-		PP_3213	0.38	-1.1
3,646,427	-		PP_3213	0.38	-0.7
3,646,483	-		PP_3213	0.44	-0.5
3,646,510	+		PP_3213	0.46	+1.0
3,646,510	+		PP_3213	0.46	-0.8
3,646,511	-		PP_3213	0.46	-1.6
3,646,564	+		PP_3213	0.51	-0.9
3,646,564	+		PP_3213	0.51	+0.3
3,646,565	-		PP_3213	0.52	-0.3
3,646,593	+		PP_3213	0.54	-0.9
3,646,594	+		PP_3213	0.54	+0.3
3,646,598	+		PP_3213	0.55	-0.6
3,646,598	+		PP_3213	0.55	-0.6
3,646,599	-		PP_3213	0.55	-0.2
3,646,783	+		PP_3213	0.73	-0.1
3,646,783	+		PP_3213	0.73	-0.6
3,646,784	-		PP_3213	0.73	-0.4
3,646,784	-		PP_3213	0.73	-1.0
3,646,784	-		PP_3213	0.73	-0.3
3,646,906	+		PP_3213	0.85	-0.1
3,646,933	+		PP_3213	0.87	-0.6
3,647,214	+				-0.1
3,647,242	+				-0.9
3,647,243	-				+0.1
3,647,299	+				-0.4
3,647,435	+				+0.7
3,647,436	-				-1.1
3,647,436	-				-0.3
3,647,436	-				+0.1
3,647,478	-				-1.1
3,647,493	-				-0.2
3,647,493	-				-0.5
3,647,502	-				+0.7
3,647,507	+				+0.2
3,647,516	-				-0.2
3,647,828	+		PP_3214	0.14	+0.9
3,647,828	+		PP_3214	0.14	-0.8
3,647,828	+		PP_3214	0.14	+1.0
3,647,829	-				+0.5
3,647,829	-		PP_3214	0.14	+0.7
3,647,829	-		PP_3214	0.14	+0.5
3,647,848	+		PP_3214	0.16	+0.1
3,647,978	+		PP_3214	0.32	-0.1
3,647,979	-		PP_3214	0.32	-1.3
3,647,979	-		PP_3214	0.32	-0.7
3,647,985	-		PP_3214	0.33	+0.2
3,647,987	+		PP_3214	0.33	+0.1
3,648,044	+		PP_3214	0.41	-0.1