Strain Fitness in Pseudomonas putida KT2440 around PP_2677

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.25 vol% (C)
3,064,091	+		PP_2675	0.81	-4.1
3,064,091	+		PP_2675	0.81	-3.1
3,064,092	-		PP_2675	0.81	-2.1
3,064,092	-		PP_2675	0.81	-2.4
3,064,113	-		PP_2675	0.86	-4.1
3,064,148	+				-2.7
3,064,149	-				-3.2
3,064,255	+		PP_2676	0.13	-1.3
3,064,256	-		PP_2676	0.13	-2.3
3,064,256	-		PP_2676	0.13	-1.4
3,064,256	-		PP_2676	0.13	-1.7
3,064,450	+		PP_2676	0.34	-3.2
3,064,451	-		PP_2676	0.34	-2.5
3,064,451	-		PP_2676	0.34	-2.0
3,064,513	+		PP_2676	0.41	-1.7
3,064,514	-		PP_2676	0.41	-1.1
3,064,672	-		PP_2676	0.58	-1.3
3,064,954	+		PP_2676	0.89	-1.7
3,064,954	+		PP_2676	0.89	-2.5
3,064,954	+		PP_2676	0.89	-2.6
3,064,954	+		PP_2676	0.89	-3.4
3,064,955	-		PP_2676	0.89	-0.8
3,064,955	-		PP_2676	0.89	-1.6
3,064,955	-		PP_2676	0.89	-0.9
3,065,012	-				-3.0
3,065,012	-				-0.9
3,065,012	-				-2.8
3,065,012	-				-2.6
3,065,032	+				-1.2
3,065,050	+				+0.9
3,065,050	+				+0.2
3,065,051	-				+0.1
3,065,051	-				+0.1
3,065,056	+				-0.6
3,065,056	+				+0.3
3,065,176	-		PP_2677	0.15	+0.6
3,065,315	+		PP_2677	0.33	-1.1
3,065,501	+		PP_2677	0.57	+0.6
3,065,675	-		PP_2677	0.80	+0.5
3,066,132	+				-0.5
3,066,269	+		PP_2678	0.44	-1.3
3,066,270	-		PP_2678	0.44	+1.9
3,066,270	-		PP_2678	0.44	+0.9
3,066,270	-		PP_2678	0.44	+0.2
3,066,270	-		PP_2678	0.44	+0.1
3,066,270	-		PP_2678	0.44	+1.4
3,066,389	-		PP_2678	0.56	+0.4
3,066,455	+		PP_2678	0.64	-0.0
3,066,456	-		PP_2678	0.64	+0.3
3,066,456	-		PP_2678	0.64	-2.0
3,066,549	+		PP_2678	0.74	+0.5
3,066,605	+		PP_2678	0.80	+0.7
3,066,720	-				+0.1