Strain Fitness in Pseudomonas putida KT2440 around PP_2604

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.25 vol% (C)
2,976,036	+				+0.6
2,976,037	-				-0.6
2,976,037	-				-0.2
2,976,044	+				-0.2
2,976,044	+				-0.1
2,976,045	-				-0.5
2,976,045	-				+0.4
2,976,045	-				-1.2
2,976,047	+				-0.4
2,976,047	+				-1.1
2,976,048	-				+0.4
2,976,048	-				-0.4
2,976,062	+				-0.1
2,976,062	+				-0.7
2,976,063	-				+0.4
2,976,153	-		PP_2603	0.11	-0.9
2,976,376	-		PP_2603	0.38	+0.3
2,976,447	-		PP_2603	0.47	-0.8
2,976,489	+		PP_2603	0.52	-2.1
2,976,490	-		PP_2603	0.52	+0.1
2,976,490	-		PP_2603	0.52	-0.8
2,976,490	-		PP_2603	0.52	-0.6
2,976,629	+		PP_2603	0.69	-1.8
2,976,629	+		PP_2603	0.69	+0.2
2,976,748	-		PP_2603	0.84	+0.8
2,977,013	+				+0.2
2,977,013	+				+1.5
2,977,014	-				-0.0
2,977,063	+				-1.2
2,977,063	+				-0.9
2,977,064	-				-1.2
2,977,087	+				+0.6
2,977,088	-				+1.0
2,977,107	-				-0.6
2,977,120	+				+0.2
2,977,120	+				+0.9
2,977,121	-				-0.5
2,977,121	-				-0.8
2,977,121	-				+0.3
2,977,121	-				+0.9
2,977,121	-				+0.0
2,977,121	-				-1.2
2,977,209	+		PP_2604	0.14	+0.0
2,977,237	+		PP_2604	0.16	-0.1
2,977,260	-		PP_2604	0.17	-0.6
2,977,526	-		PP_2604	0.37	-0.1
2,977,526	-		PP_2604	0.37	-1.2
2,977,526	-		PP_2604	0.37	+0.3
2,977,555	+		PP_2604	0.40	-0.7
2,977,555	+		PP_2604	0.40	-0.0
2,977,562	-		PP_2604	0.40	-0.3
2,977,592	-		PP_2604	0.42	+0.0
2,977,681	+		PP_2604	0.49	-1.2
2,977,682	-		PP_2604	0.49	+0.4
2,977,726	+		PP_2604	0.53	+0.1
2,977,726	+		PP_2604	0.53	-1.7
2,977,726	+		PP_2604	0.53	-1.3
2,977,729	+				+0.8
2,977,730	-		PP_2604	0.53	+0.1
2,977,730	-		PP_2604	0.53	-0.1
2,977,937	-		PP_2604	0.68	-0.9
2,978,037	+		PP_2604	0.76	-0.6
2,978,037	+		PP_2604	0.76	+0.0
2,978,110	+		PP_2604	0.82	-0.6
2,978,111	-		PP_2604	0.82	-0.1
2,978,216	-		PP_2604	0.90	-0.9
2,978,216	-		PP_2604	0.90	-0.5
2,978,216	-		PP_2604	0.90	+0.2
2,978,216	-		PP_2604	0.90	-1.2
2,978,354	+				+0.2
2,978,354	+				-1.2
2,978,355	-				+0.0
2,978,355	-				-0.5
2,978,355	-				+0.4
2,978,355	-				-0.5
2,978,355	-				+0.2
2,978,378	+				+0.6
2,978,394	+				-0.1
2,978,533	+				-0.9
2,978,552	+				-0.2
2,978,640	-				+0.4
2,978,667	+				-0.1
2,978,684	+				-0.0
2,978,688	-				+0.0
2,978,868	+		PP_2605	0.16	-0.4
2,978,868	+		PP_2605	0.16	+0.3
2,978,868	+				-2.6
2,978,869	-		PP_2605	0.16	+0.4
2,978,869	-		PP_2605	0.16	+0.5
2,978,872	+		PP_2605	0.16	-0.2
2,978,903	+		PP_2605	0.18	+0.0
2,978,903	+		PP_2605	0.18	-0.3
2,978,928	+		PP_2605	0.20	-0.4
2,978,929	-		PP_2605	0.20	+0.7
2,979,044	+		PP_2605	0.27	-0.3
2,979,059	+		PP_2605	0.27	+0.5
2,979,060	-		PP_2605	0.27	+0.9
2,979,104	+		PP_2605	0.30	+1.1
2,979,105	-		PP_2605	0.30	+0.0
2,979,198	-		PP_2605	0.36	+2.0