Strain Fitness in Pseudomonas putida KT2440 around PP_2589

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.25 vol% (C)
2,956,392	+		PP_2588	0.53	-0.0
2,956,392	+		PP_2588	0.53	-0.3
2,956,412	+		PP_2588	0.54	+0.5
2,956,497	+		PP_2588	0.60	+0.4
2,956,497	+		PP_2588	0.60	-0.2
2,956,497	+		PP_2588	0.60	+0.1
2,956,497	+		PP_2588	0.60	+1.4
2,956,551	+		PP_2588	0.64	+0.2
2,956,639	-		PP_2588	0.71	+0.4
2,957,012	-				+0.0
2,957,044	-				-0.2
2,957,190	+				+0.5
2,957,191	-				+0.8
2,957,191	-				+0.9
2,957,197	+				+0.0
2,957,197	+				-0.2
2,957,197	+				-0.2
2,957,197	+				+0.4
2,957,198	-				-0.5
2,957,244	+				+0.3
2,957,245	-				+0.4
2,957,283	+				+1.5
2,957,374	+				-1.3
2,957,374	+				+0.2
2,957,374	+				-0.4
2,957,375	-				-0.2
2,957,583	+		PP_2589	0.23	-0.7
2,957,584	-		PP_2589	0.23	+0.5
2,957,584	-		PP_2589	0.23	-0.3
2,957,584	-				+1.8
2,957,584	-				-0.2
2,957,650	-		PP_2589	0.27	-0.0
2,957,801	-		PP_2589	0.37	+0.3
2,957,956	+		PP_2589	0.48	+0.5
2,957,985	+		PP_2589	0.50	-0.1
2,957,985	+		PP_2589	0.50	+0.5
2,957,998	-		PP_2589	0.51	-0.5
2,958,378	+		PP_2589	0.76	+0.4
2,958,379	-		PP_2589	0.76	+0.1
2,958,379	-		PP_2589	0.76	-0.8
2,958,379	-		PP_2589	0.76	+0.3
2,958,379	-		PP_2589	0.76	+0.1
2,958,513	+		PP_2589	0.85	-0.8
2,958,513	+		PP_2589	0.85	+0.0
2,958,514	-		PP_2589	0.85	-0.5
2,958,514	-		PP_2589	0.85	+1.1
2,958,514	-		PP_2589	0.85	+0.7
2,958,514	-		PP_2589	0.85	+0.0
2,958,737	+				-1.4
2,958,737	+				-0.9
2,958,737	+				+0.1
2,958,737	+				+1.0
2,958,737	+				-2.0
2,958,738	-				+0.8
2,958,738	-				+0.8
2,958,738	-				-0.0
2,958,738	-				-1.6
2,958,852	-				+0.6
2,958,877	+				+0.5
2,958,878	-				-1.4
2,958,904	+				+0.2
2,958,955	+				+0.1
2,959,087	+				+0.3
2,959,088	-				-0.3
2,959,088	-				-0.0
2,959,088	-				-0.1
2,959,088	-				-0.2
2,959,246	+		PP_2590	0.16	-0.6
2,959,246	+		PP_2590	0.16	-0.0
2,959,246	+		PP_2590	0.16	-0.4
2,959,247	-		PP_2590	0.16	+0.4
2,959,247	-		PP_2590	0.16	-0.5
2,959,247	-		PP_2590	0.16	+0.3
2,959,361	+		PP_2590	0.21	-0.6
2,959,363	+		PP_2590	0.21	+1.3
2,959,363	+		PP_2590	0.21	-0.3
2,959,364	-		PP_2590	0.21	-0.3
2,959,364	-		PP_2590	0.21	+0.4
2,959,364	-		PP_2590	0.21	-0.3
2,959,477	+		PP_2590	0.26	+1.8
2,959,477	+		PP_2590	0.26	-0.7
2,959,528	+		PP_2590	0.28	-0.5
2,959,529	-		PP_2590	0.28	-0.4
2,959,639	+		PP_2590	0.33	-0.8
2,959,639	+		PP_2590	0.33	-0.2
2,959,639	+		PP_2590	0.33	-0.7
2,959,639	+		PP_2590	0.33	-0.0
2,959,640	-		PP_2590	0.33	+0.3
2,959,726	+		PP_2590	0.37	-0.7
2,959,726	+		PP_2590	0.37	-1.0
2,959,727	-		PP_2590	0.37	+0.3