Strain Fitness in Pseudomonas putida KT2440 around PP_2588

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.25 vol% (C)
2,954,719	-				+0.3
2,954,719	-				+1.7
2,954,774	+				-0.6
2,954,775	-				-0.4
2,954,775	-				-0.0
2,954,913	+		PP_2587	0.16	-0.4
2,954,914	-		PP_2587	0.16	-1.2
2,955,015	+		PP_2587	0.28	-0.3
2,955,034	-		PP_2587	0.30	+0.6
2,955,035	-		PP_2587	0.30	+0.6
2,955,070	-		PP_2587	0.35	-0.2
2,955,114	+		PP_2587	0.40	-0.2
2,955,115	-		PP_2587	0.40	-0.7
2,955,117	+		PP_2587	0.40	-1.0
2,955,118	-		PP_2587	0.40	-0.4
2,955,118	-		PP_2587	0.40	-0.5
2,955,118	-		PP_2587	0.40	-0.5
2,955,162	+				+0.4
2,955,162	+		PP_2587	0.46	-0.2
2,955,163	-		PP_2587	0.46	+2.6
2,955,269	-		PP_2587	0.58	+0.7
2,955,344	+		PP_2587	0.67	-0.6
2,955,345	-		PP_2587	0.67	-0.0
2,955,345	-		PP_2587	0.67	+0.4
2,955,345	-		PP_2587	0.67	-0.3
2,955,600	+				-0.8
2,955,601	-				+0.2
2,955,870	+		PP_2588	0.15	+0.5
2,955,870	+		PP_2588	0.15	-0.1
2,955,924	+		PP_2588	0.19	-0.5
2,955,925	-		PP_2588	0.19	-0.3
2,955,925	-		PP_2588	0.19	+0.5
2,955,925	-		PP_2588	0.19	-0.7
2,955,927	+		PP_2588	0.19	+0.3
2,955,927	+		PP_2588	0.19	-0.4
2,955,927	+		PP_2588	0.19	+0.7
2,955,928	-				+2.1
2,955,928	-		PP_2588	0.19	+0.3
2,956,006	-		PP_2588	0.25	+0.6
2,956,020	+		PP_2588	0.26	-0.0
2,956,021	-		PP_2588	0.26	-2.6
2,956,052	-		PP_2588	0.28	+0.8
2,956,052	-		PP_2588	0.28	-0.1
2,956,052	-		PP_2588	0.28	-0.3
2,956,392	+		PP_2588	0.53	-0.0
2,956,392	+		PP_2588	0.53	-0.3
2,956,412	+		PP_2588	0.54	+0.5
2,956,497	+		PP_2588	0.60	+0.4
2,956,497	+		PP_2588	0.60	-0.2
2,956,497	+		PP_2588	0.60	+0.1
2,956,497	+		PP_2588	0.60	+1.4
2,956,551	+		PP_2588	0.64	+0.2
2,956,639	-		PP_2588	0.71	+0.4
2,957,012	-				+0.0
2,957,044	-				-0.2
2,957,190	+				+0.5
2,957,191	-				+0.8
2,957,191	-				+0.9
2,957,197	+				+0.0
2,957,197	+				-0.2
2,957,197	+				-0.2
2,957,197	+				+0.4
2,957,198	-				-0.5
2,957,244	+				+0.3
2,957,245	-				+0.4
2,957,283	+				+1.5
2,957,374	+				-1.3
2,957,374	+				+0.2
2,957,374	+				-0.4
2,957,375	-				-0.2
2,957,583	+		PP_2589	0.23	-0.7
2,957,584	-		PP_2589	0.23	+0.5
2,957,584	-		PP_2589	0.23	-0.3
2,957,584	-				+1.8
2,957,584	-				-0.2
2,957,650	-		PP_2589	0.27	-0.0
2,957,801	-		PP_2589	0.37	+0.3
2,957,956	+		PP_2589	0.48	+0.5
2,957,985	+		PP_2589	0.50	-0.1
2,957,985	+		PP_2589	0.50	+0.5
2,957,998	-		PP_2589	0.51	-0.5