Strain Fitness in Pseudomonas putida KT2440 around PP_2375

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.25 vol% (C)
2,710,433	+				-0.0
2,710,533	+				+0.1
2,710,569	-		PP_2373	0.17	+1.2
2,710,677	+		PP_2373	0.87	-0.4
2,710,678	-		PP_2373	0.87	+0.1
2,710,721	-				-0.1
2,710,721	-				+0.1
2,710,721	-				-0.0
2,710,762	+				-0.2
2,710,796	+				+0.1
2,710,797	-				+0.1
2,710,825	+				+0.7
2,710,925	+				-0.5
2,710,975	+				+0.1
2,711,266	+				-0.2
2,711,266	+				-0.1
2,711,266	+				-0.1
2,711,267	-				+0.2
2,711,267	-				-0.0
2,711,267	-				-0.2
2,711,327	+				-0.2
2,711,327	+				-0.3
2,711,328	-				+0.6
2,711,355	+				+0.4
2,711,356	-				-0.1
2,711,398	-				+0.0
2,711,398	-				+0.6
2,711,417	-				-0.5
2,711,447	-				-2.7
2,711,470	-				-1.1
2,711,586	+				-2.6
2,711,586	+				+0.1
2,711,586	+				-1.7
2,711,587	-				-1.1
2,711,703	+				-2.2
2,711,704	-				-0.5
2,711,768	-		PP_2375	0.10	-1.7
2,711,844	+		PP_2375	0.12	-0.0
2,711,845	-		PP_2375	0.12	-1.8
2,711,845	-		PP_2375	0.12	-1.5
2,711,845	-		PP_2375	0.12	-1.5
2,711,866	-		PP_2375	0.13	-1.6
2,711,918	+		PP_2375	0.14	+0.3
2,711,918	+		PP_2375	0.14	+0.3
2,711,918	+		PP_2375	0.14	-1.9
2,711,918	+		PP_2375	0.14	+0.1
2,711,919	-		PP_2375	0.14	-3.9
2,711,919	-		PP_2375	0.14	-1.6
2,711,919	-		PP_2375	0.14	-0.6
2,711,922	+		PP_2375	0.14	-0.5
2,711,923	-		PP_2375	0.14	-2.6
2,711,923	-		PP_2375	0.14	-0.0
2,712,162	+		PP_2375	0.21	-2.8
2,712,163	-		PP_2375	0.21	-1.5
2,712,163	-		PP_2375	0.21	-3.1
2,712,262	-		PP_2375	0.23	-1.3
2,712,348	+		PP_2375	0.26	+1.0
2,712,378	+		PP_2375	0.26	-1.8
2,712,379	-		PP_2375	0.27	+0.2
2,712,379	-		PP_2375	0.27	+0.8
2,712,435	+		PP_2375	0.28	-1.8
2,712,436	-		PP_2375	0.28	-0.0
2,712,529	-		PP_2375	0.31	-1.5
2,712,529	-		PP_2375	0.31	-2.7
2,712,529	-		PP_2375	0.31	-2.9
2,712,550	-		PP_2375	0.31	-1.8
2,713,182	+		PP_2375	0.48	-2.3
2,713,182	+		PP_2375	0.48	-2.6
2,713,183	-		PP_2375	0.48	-1.5
2,713,281	+		PP_2375	0.51	-1.3
2,713,281	+		PP_2375	0.51	-1.1
2,713,309	+		PP_2375	0.52	-2.8
2,713,342	-		PP_2375	0.52	-2.1
2,713,452	+		PP_2375	0.55	-1.0
2,713,452	+		PP_2375	0.55	-1.5
2,713,452	+				-1.2
2,713,452	+		PP_2375	0.55	-2.3
2,713,453	-		PP_2375	0.55	-2.4
2,713,453	-		PP_2375	0.55	-1.5
2,713,582	-		PP_2375	0.59	+0.2
2,713,904	+		PP_2375	0.68	-0.0
2,713,954	+		PP_2375	0.69	-0.6
2,713,957	-		PP_2375	0.69	-0.6
2,713,957	-		PP_2375	0.69	-0.9
2,714,113	-		PP_2375	0.73	-1.6
2,714,113	-		PP_2375	0.73	-1.3
2,714,113	-		PP_2375	0.73	+1.3
2,714,113	-		PP_2375	0.73	-0.8
2,714,245	-		PP_2375	0.77	-0.6
2,714,325	+		PP_2375	0.79	-1.5
2,714,326	-		PP_2375	0.79	-0.9
2,714,326	-		PP_2375	0.79	-0.9
2,714,326	-		PP_2375	0.79	-0.8
2,714,326	-		PP_2375	0.79	-4.2
2,714,432	-		PP_2375	0.82	-1.8
2,714,607	+		PP_2375	0.87	-1.4
2,714,690	-		PP_2375	0.89	+0.2
2,714,793	+				-2.6
2,714,883	+				-3.4
2,714,942	-				-0.7
2,715,019	+				-2.8
2,715,019	+				-0.5
2,715,019	+				-2.0
2,715,020	-				-1.0
2,715,020	-				+0.3
2,715,020	-				-1.3
2,715,020	-				-1.1
2,715,020	-				-0.9
2,715,022	+				-3.0
2,715,022	+				-0.1
2,715,023	-				-1.0
2,715,023	-				-2.4
2,715,103	+				-0.3
2,715,103	+				-0.0
2,715,103	+				-2.4
2,715,104	-				-1.4
2,715,104	-				-1.0
2,715,104	-				-0.6
2,715,104	-				-0.5
2,715,110	+				-1.8
2,715,111	-				-0.1
2,715,147	-				+0.1
2,715,298	-				+0.1
2,715,298	-				-0.1
2,715,369	+				-0.4
2,715,370	-				-0.2
2,715,505	+				-0.3
2,715,506	-				+0.3
2,715,550	+		PP_2376	0.11	-0.2
2,715,669	+		PP_2376	0.17	+0.1
2,715,670	-		PP_2376	0.17	-0.0
2,715,755	-		PP_2376	0.20	+0.4
2,715,818	-		PP_2376	0.23	+0.2
2,715,862	+		PP_2376	0.25	-0.5
2,715,968	-		PP_2376	0.30	-0.4
2,716,069	-		PP_2376	0.34	+0.1