Strain Fitness in Pseudomonas putida KT2440 around PP_2115

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2114 and PP_2115 are separated by 344 nucleotidesPP_2115 and PP_2116 are separated by 21 nucleotidesPP_2116 and PP_2117 are separated by 60 nucleotides PP_2114: PP_2114 - transposase, at 2,413,157 to 2,414,458 _2114 PP_2115: PP_2115 - conserved protein of unknown function, at 2,414,803 to 2,415,000 _2115 PP_2116: PP_2116 - sulfurtransferase, at 2,415,022 to 2,415,264 _2116 PP_2117: PP_2117 - Erythronate-4-phosphate dehydrogenase, at 2,415,325 to 2,416,467 _2117 Position (kb) 2414 2415 2416Strain fitness (log2 ratio) -1 0 1at 2415.295 kb on + strandat 2415.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-3-buten-1-ol 0.25 vol% (C)
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2,415,295 + -0.0
2,415,332 + -1.2

Or see this region's nucleotide sequence