Strain Fitness in Pseudomonas putida KT2440 around PP_1743

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.25 vol% (C)
1,941,864	-		PP_1741	0.47	+0.4
1,941,864	-		PP_1741	0.47	-2.1
1,941,864	-		PP_1741	0.47	-0.1
1,941,942	+		PP_1741	0.56	+0.1
1,941,943	-		PP_1741	0.56	+1.0
1,941,958	-		PP_1741	0.58	-0.2
1,942,011	+		PP_1741	0.64	-1.3
1,942,011	+		PP_1741	0.64	+0.6
1,942,012	-		PP_1741	0.64	+1.1
1,942,105	+		PP_1741	0.75	+1.0
1,942,105	+		PP_1741	0.75	+0.4
1,942,105	+		PP_1741	0.75	+0.4
1,942,105	+		PP_1741	0.75	+0.0
1,942,106	-		PP_1741	0.75	-0.4
1,942,106	-		PP_1741	0.75	-3.0
1,942,106	-		PP_1741	0.75	+0.7
1,942,107	+		PP_1741	0.75	-0.3
1,942,108	-		PP_1741	0.75	-0.3
1,942,108	-		PP_1741	0.75	+0.2
1,942,320	+				-0.2
1,942,320	+				-0.5
1,942,320	+				-0.4
1,942,321	-				+0.6
1,942,369	+				+0.1
1,942,383	+				-0.0
1,942,383	+				-1.5
1,942,410	-				-0.7
1,942,437	+				+0.1
1,942,443	+				-0.9
1,942,443	+				-1.8
1,942,443	+				+0.2
1,942,444	-				+0.1
1,942,444	-				-0.1
1,942,444	-				+0.8
1,942,444	-				-0.6
1,942,475	+				+0.1
1,942,475	+				-0.6
1,942,476	-				-0.1
1,942,476	-				+0.7
1,942,480	+				-0.5
1,942,502	+				-1.8
1,942,514	+				-1.2
1,942,542	+				+1.1
1,942,542	+				-1.4
1,942,543	-				-0.1
1,942,552	+				-1.1
1,942,663	-		PP_1742	0.44	+0.3
1,942,710	-		PP_1742	0.59	+0.1
1,942,770	+		PP_1742	0.78	-1.0
1,942,770	+		PP_1742	0.78	+0.2
1,942,771	-				-0.7
1,942,997	+				+0.1
1,942,997	+				+0.2
1,942,997	+				-0.3
1,942,997	+				+0.2
1,942,998	-				+0.3
1,942,998	-				+0.3
1,943,034	-		PP_1743	0.12	-0.6
1,943,034	-		PP_1743	0.12	-0.7
1,943,036	+		PP_1743	0.12	+0.5
1,943,037	-		PP_1743	0.12	+0.7
1,943,037	-		PP_1743	0.12	-0.0
1,943,093	+		PP_1743	0.15	+0.6
1,943,093	+		PP_1743	0.15	+0.3
1,943,094	-		PP_1743	0.16	-0.2
1,943,162	+		PP_1743	0.20	+0.1
1,943,162	+		PP_1743	0.20	-1.4
1,943,237	+		PP_1743	0.24	-0.9
1,943,238	-		PP_1743	0.24	-0.0
1,943,238	-		PP_1743	0.24	+1.0
1,943,238	-		PP_1743	0.24	+0.1
1,943,327	+		PP_1743	0.30	-2.2
1,943,387	+		PP_1743	0.33	-0.7
1,943,387	+		PP_1743	0.33	-0.7
1,943,388	-		PP_1743	0.33	-0.2
1,943,388	-		PP_1743	0.33	-0.1
1,943,388	-		PP_1743	0.33	-1.0
1,943,429	+		PP_1743	0.36	+1.0
1,943,429	+		PP_1743	0.36	+1.3
1,943,429	+		PP_1743	0.36	-0.3
1,943,430	-		PP_1743	0.36	-1.2
1,943,430	-		PP_1743	0.36	+0.3
1,943,430	-		PP_1743	0.36	-0.1
1,943,536	-		PP_1743	0.42	+0.3
1,943,536	-		PP_1743	0.42	+0.2
1,943,577	+		PP_1743	0.45	+0.0
1,943,577	+		PP_1743	0.45	-0.6
1,943,578	-		PP_1743	0.45	-2.1
1,943,668	+		PP_1743	0.50	-0.9
1,943,744	+		PP_1743	0.55	+0.3
1,943,744	+		PP_1743	0.55	+0.7
1,943,744	+		PP_1743	0.55	-0.3
1,943,744	+		PP_1743	0.55	+1.4
1,943,745	-		PP_1743	0.55	-0.0
1,943,745	-		PP_1743	0.55	-0.2
1,943,766	-		PP_1743	0.56	+0.4
1,943,771	+				-2.3
1,943,772	-		PP_1743	0.56	-0.5
1,943,772	-		PP_1743	0.56	-0.2
1,943,772	-		PP_1743	0.56	+0.0
1,943,772	-		PP_1743	0.56	-0.6
1,944,008	+		PP_1743	0.70	-0.5
1,944,009	-		PP_1743	0.71	+0.0
1,944,090	+		PP_1743	0.75	+0.7
1,944,091	-		PP_1743	0.75	+0.4
1,944,091	-		PP_1743	0.75	+0.9
1,944,091	-		PP_1743	0.75	+0.1
1,944,204	-		PP_1743	0.82	-0.8
1,944,204	-		PP_1743	0.82	-0.4
1,944,329	+		PP_1743	0.90	+1.0
1,944,335	+				+0.1
1,944,336	-				+1.3
1,944,342	-				-0.3
1,944,497	+				-0.2
1,944,497	+				-0.3
1,944,497	+				+0.3
1,944,497	+				-0.2
1,944,498	-				+0.1
1,944,661	+				+1.2
1,944,662	-				-0.4
1,944,668	+				+2.6
1,944,668	+				-0.1
1,944,669	-				+0.3
1,944,749	-				+0.9
1,944,764	+				-0.1
1,944,764	+				-0.5
1,944,764	+				+0.2
1,944,764	+				+1.2
1,944,764	+				-0.4
1,944,764	+				-1.3
1,944,764	+				+0.5
1,944,765	-				-0.5
1,944,782	+		PP_1744	0.14	-0.3
1,944,782	+		PP_1744	0.14	+0.2
1,944,782	+		PP_1744	0.14	-0.1
1,944,782	+		PP_1744	0.14	+0.3
1,944,785	+		PP_1744	0.16	-0.4
1,944,785	+		PP_1744	0.16	+0.1
1,944,786	-		PP_1744	0.16	+0.9
1,944,831	+		PP_1744	0.46	+1.0
1,944,898	+				+0.2
1,944,933	+				-0.7
1,944,992	-				-0.0
1,945,080	+				+0.2
1,945,081	-				-0.4
1,945,081	-				+1.6
1,945,306	+		PP_1745	0.23	-0.8
1,945,306	+		PP_1745	0.23	+0.9
1,945,309	-		PP_1745	0.23	+0.5
1,945,309	-		PP_1745	0.23	+0.0
1,945,309	-		PP_1745	0.23	+0.8