Strain Fitness in Pseudomonas putida KT2440 around PP_1722

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.25 vol% (C)
1,921,381	-		PP_1720	0.85	+0.4
1,921,431	-				+2.3
1,921,457	+				-1.6
1,921,457	+				+0.4
1,921,458	-				+0.6
1,921,458	-				+0.1
1,921,523	+				-0.4
1,921,577	+				-0.8
1,921,711	-				-0.8
1,921,785	+		PP_1721	0.30	+0.3
1,921,786	-		PP_1721	0.31	+1.0
1,921,816	-		PP_1721	0.35	+0.4
1,921,972	-		PP_1721	0.59	+0.3
1,922,070	+		PP_1721	0.74	+1.1
1,922,070	+		PP_1721	0.74	-0.3
1,922,070	+		PP_1721	0.74	-0.7
1,922,071	-		PP_1721	0.74	+1.3
1,922,071	-		PP_1721	0.74	-0.0
1,922,071	-		PP_1721	0.74	-0.6
1,922,071	-		PP_1721	0.74	+0.9
1,922,071	-		PP_1721	0.74	-1.3
1,922,100	+		PP_1721	0.79	+0.2
1,922,100	+				-0.7
1,922,100	+		PP_1721	0.79	+0.1
1,922,101	-		PP_1721	0.79	+0.0
1,922,101	-		PP_1721	0.79	-0.2
1,922,101	-		PP_1721	0.79	-0.3
1,922,296	+				-0.7
1,922,296	+				-0.4
1,922,534	+		PP_1722	0.28	+0.9
1,922,534	+		PP_1722	0.28	-1.2
1,922,534	+		PP_1722	0.28	+0.2
1,922,579	+		PP_1722	0.33	+1.5
1,922,580	-		PP_1722	0.33	-2.4
1,922,580	-		PP_1722	0.33	+0.7
1,922,893	+		PP_1722	0.65	+0.7
1,922,894	-		PP_1722	0.65	+0.7
1,922,993	+		PP_1722	0.75	+0.2
1,922,993	+		PP_1722	0.75	+0.6
1,922,994	-		PP_1722	0.75	+0.4
1,922,994	-		PP_1722	0.75	+1.0
1,923,034	+		PP_1722	0.79	+0.8
1,923,064	+		PP_1722	0.82	+0.7
1,923,065	-		PP_1722	0.82	-1.2
1,923,065	-		PP_1722	0.82	+0.3
1,923,206	+				-0.7
1,923,206	+				-0.8
1,923,226	+				+0.8
1,923,227	-				-0.7
1,923,306	+				-1.6
1,923,306	+				+0.8
1,923,307	-				-0.1
1,923,363	+		PP_1723	0.15	+0.3
1,923,363	+		PP_1723	0.15	+0.2
1,923,364	-		PP_1723	0.15	+0.2
1,923,585	+		PP_1723	0.43	-0.6
1,923,585	+		PP_1723	0.43	+2.3
1,923,585	+		PP_1723	0.43	-0.3
1,923,585	+		PP_1723	0.43	+0.5
1,923,586	-		PP_1723	0.43	-0.4
1,923,586	-		PP_1723	0.43	+0.1
1,923,612	+		PP_1723	0.46	+0.7
1,923,612	+		PP_1723	0.46	-0.3
1,923,613	-		PP_1723	0.46	+1.1
1,923,613	-		PP_1723	0.46	-0.4
1,923,666	+		PP_1723	0.53	-0.2
1,923,667	-		PP_1723	0.53	-1.1
1,923,762	+		PP_1723	0.65	+1.1
1,923,763	-		PP_1723	0.65	+0.1
1,923,763	-		PP_1723	0.65	-1.3
1,923,818	+		PP_1723	0.72	-0.0
1,923,882	+		PP_1723	0.80	+0.0
1,923,882	+		PP_1723	0.80	+0.3
1,923,883	-		PP_1723	0.80	-1.5
1,923,883	-		PP_1723	0.80	-0.4
1,923,990	+				+0.5
1,923,990	+				-1.3
1,923,991	-				-0.7
1,924,042	+				+0.7
1,924,042	+				-0.4
1,924,042	+				+0.4
1,924,042	+				+1.5
1,924,042	+				+2.9
1,924,043	-				-0.7
1,924,043	-				+0.9
1,924,043	-				+0.3
1,924,068	+				+0.2
1,924,068	+				+1.3
1,924,069	-				+0.9
1,924,069	-				-0.0
1,924,180	-		PP_1724	0.18	-0.5
1,924,207	+		PP_1724	0.21	-0.5
1,924,207	+		PP_1724	0.21	-0.6
1,924,207	+		PP_1724	0.21	-2.0
1,924,208	-		PP_1724	0.21	-0.0