Strain Fitness in Pseudomonas putida KT2440 around PP_0693

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0691 and PP_0692 overlap by 4 nucleotidesPP_0692 and PP_0693 are separated by 93 nucleotidesPP_0693 and PP_0694 overlap by 4 nucleotidesPP_0694 and PP_0695 overlap by 11 nucleotides PP_0691: PP_0691 - Glutamate 5-kinase, at 802,828 to 803,946 _0691 PP_0692: PP_0692 - conserved protein of unknown function, at 803,943 to 804,404 _0692 PP_0693: PP_0693 - conserved protein of unknown function, at 804,498 to 807,329 _0693 PP_0694: PP_0694 - conserved protein of unknown function, at 807,326 to 808,033 _0694 PP_0695: PP_0695 - conserved protein of unknown function, at 808,023 to 809,357 _0695 Position (kb) 804 805 806 807 808Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 803.830 kb on + strand, within PP_0691at 803.831 kb on - strand, within PP_0691at 803.831 kb on - strand, within PP_0691at 803.896 kb on + strandat 803.896 kb on + strandat 803.897 kb on - strandat 803.899 kb on - strandat 803.918 kb on + strandat 803.942 kb on + strandat 803.962 kb on + strandat 803.962 kb on + strandat 803.962 kb on + strandat 804.087 kb on - strand, within PP_0692at 804.109 kb on - strand, within PP_0692at 804.311 kb on + strand, within PP_0692at 804.311 kb on + strand, within PP_0692at 804.311 kb on + strand, within PP_0692at 804.312 kb on - strand, within PP_0692at 804.312 kb on - strand, within PP_0692at 804.321 kb on + strand, within PP_0692at 804.321 kb on + strand, within PP_0692at 804.322 kb on - strand, within PP_0692at 804.330 kb on + strand, within PP_0692at 804.405 kb on + strandat 804.406 kb on - strandat 804.406 kb on - strandat 804.420 kb on + strandat 804.421 kb on - strandat 804.421 kb on - strandat 804.421 kb on - strandat 804.451 kb on - strandat 804.451 kb on - strandat 804.451 kb on - strandat 804.586 kb on + strandat 804.586 kb on + strandat 804.586 kb on + strandat 804.587 kb on - strandat 804.587 kb on - strandat 804.745 kb on + strandat 804.746 kb on - strandat 804.746 kb on - strandat 804.748 kb on + strandat 804.802 kb on + strand, within PP_0693at 804.802 kb on + strand, within PP_0693at 804.802 kb on + strand, within PP_0693at 804.802 kb on + strand, within PP_0693at 804.802 kb on + strand, within PP_0693at 804.803 kb on - strand, within PP_0693at 804.803 kb on - strand, within PP_0693at 804.803 kb on - strand, within PP_0693at 804.970 kb on + strand, within PP_0693at 804.971 kb on - strand, within PP_0693at 805.051 kb on + strand, within PP_0693at 805.071 kb on - strand, within PP_0693at 805.114 kb on - strand, within PP_0693at 805.198 kb on + strand, within PP_0693at 805.199 kb on - strand, within PP_0693at 805.283 kb on + strand, within PP_0693at 805.378 kb on + strand, within PP_0693at 805.379 kb on - strand, within PP_0693at 805.432 kb on + strand, within PP_0693at 805.433 kb on - strand, within PP_0693at 805.486 kb on + strand, within PP_0693at 805.486 kb on + strand, within PP_0693at 805.486 kb on + strand, within PP_0693at 805.486 kb on + strand, within PP_0693at 805.486 kb on + strand, within PP_0693at 805.487 kb on - strand, within PP_0693at 805.487 kb on - strand, within PP_0693at 805.487 kb on - strand, within PP_0693at 805.487 kb on - strand, within PP_0693at 805.487 kb on - strand, within PP_0693at 805.772 kb on - strand, within PP_0693at 805.999 kb on - strand, within PP_0693at 806.125 kb on + strand, within PP_0693at 806.125 kb on + strand, within PP_0693at 806.125 kb on + strand, within PP_0693at 806.126 kb on - strand, within PP_0693at 806.126 kb on - strand, within PP_0693at 806.126 kb on - strand, within PP_0693at 806.126 kb on - strand, within PP_0693at 806.366 kb on + strand, within PP_0693at 806.367 kb on - strand, within PP_0693at 806.488 kb on + strand, within PP_0693at 806.489 kb on - strand, within PP_0693at 806.489 kb on - strand, within PP_0693at 806.489 kb on - strand, within PP_0693at 806.489 kb on - strand, within PP_0693at 806.620 kb on + strand, within PP_0693at 806.621 kb on - strand, within PP_0693at 806.621 kb on - strand, within PP_0693at 806.621 kb on - strand, within PP_0693at 806.640 kb on + strand, within PP_0693at 806.640 kb on + strand, within PP_0693at 806.641 kb on - strand, within PP_0693at 806.675 kb on - strand, within PP_0693at 806.899 kb on + strand, within PP_0693at 806.900 kb on - strand, within PP_0693at 806.900 kb on - strand, within PP_0693at 806.998 kb on + strand, within PP_0693at 806.998 kb on + strand, within PP_0693at 806.998 kb on + strand, within PP_0693at 806.999 kb on - strand, within PP_0693at 807.094 kb on + strandat 807.095 kb on - strandat 807.095 kb on - strandat 807.095 kb on - strandat 807.115 kb on + strandat 807.142 kb on + strandat 807.142 kb on + strandat 807.143 kb on - strandat 807.143 kb on - strandat 807.143 kb on - strandat 807.143 kb on - strandat 807.213 kb on - strandat 807.232 kb on + strandat 807.232 kb on + strandat 807.314 kb on - strandat 807.573 kb on + strand, within PP_0694at 807.573 kb on + strand, within PP_0694at 807.573 kb on + strand, within PP_0694at 807.681 kb on + strand, within PP_0694at 807.681 kb on + strand, within PP_0694at 807.849 kb on + strand, within PP_0694at 807.849 kb on + strand, within PP_0694at 807.850 kb on - strand, within PP_0694at 807.853 kb on - strand, within PP_0694at 807.939 kb on + strand, within PP_0694at 807.940 kb on - strand, within PP_0694at 807.940 kb on - strand, within PP_0694at 808.058 kb on + strandat 808.136 kb on - strandat 808.198 kb on + strand, within PP_0695at 808.199 kb on - strand, within PP_0695at 808.199 kb on - strand, within PP_0695

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-3-buten-1-ol 0.25 vol% (C)
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803,830 + PP_0691 0.90 -3.1
803,831 - PP_0691 0.90 -2.4
803,831 - PP_0691 0.90 -2.5
803,896 + -1.8
803,896 + -3.4
803,897 - -3.5
803,899 - -1.8
803,918 + -3.1
803,942 + +0.5
803,962 + +0.2
803,962 + -0.5
803,962 + -0.3
804,087 - PP_0692 0.31 -1.4
804,109 - PP_0692 0.36 -0.3
804,311 + PP_0692 0.80 -0.4
804,311 + PP_0692 0.80 -1.0
804,311 + PP_0692 0.80 -0.5
804,312 - PP_0692 0.80 -0.6
804,312 - PP_0692 0.80 -0.5
804,321 + PP_0692 0.82 +0.5
804,321 + PP_0692 0.82 +0.5
804,322 - PP_0692 0.82 -0.0
804,330 + PP_0692 0.84 -0.3
804,405 + +0.2
804,406 - +1.2
804,406 - +0.4
804,420 + -0.5
804,421 - +1.3
804,421 - +0.7
804,421 - +0.9
804,451 - -0.5
804,451 - -0.6
804,451 - -0.3
804,586 + -0.4
804,586 + +0.2
804,586 + +1.3
804,587 - +0.6
804,587 - -0.9
804,745 + -1.0
804,746 - -0.5
804,746 - +0.3
804,748 + -0.4
804,802 + PP_0693 0.11 -0.4
804,802 + PP_0693 0.11 -1.2
804,802 + PP_0693 0.11 -1.0
804,802 + PP_0693 0.11 -0.9
804,802 + PP_0693 0.11 -2.4
804,803 - PP_0693 0.11 -1.7
804,803 - PP_0693 0.11 -0.2
804,803 - PP_0693 0.11 +0.7
804,970 + PP_0693 0.17 +0.2
804,971 - PP_0693 0.17 -0.6
805,051 + PP_0693 0.20 +0.3
805,071 - PP_0693 0.20 -1.1
805,114 - PP_0693 0.22 -1.1
805,198 + PP_0693 0.25 -0.4
805,199 - PP_0693 0.25 -0.4
805,283 + PP_0693 0.28 -1.8
805,378 + PP_0693 0.31 -1.2
805,379 - PP_0693 0.31 -0.3
805,432 + PP_0693 0.33 +0.4
805,433 - PP_0693 0.33 -1.3
805,486 + PP_0693 0.35 -0.5
805,486 + PP_0693 0.35 +0.9
805,486 + PP_0693 0.35 -1.4
805,486 + PP_0693 0.35 -0.8
805,486 + PP_0693 0.35 -2.0
805,487 - PP_0693 0.35 -0.3
805,487 - PP_0693 0.35 -1.1
805,487 - PP_0693 0.35 -1.6
805,487 - PP_0693 0.35 -0.4
805,487 - PP_0693 0.35 -1.1
805,772 - PP_0693 0.45 -0.6
805,999 - PP_0693 0.53 -0.8
806,125 + PP_0693 0.57 -0.2
806,125 + PP_0693 0.57 -1.9
806,125 + PP_0693 0.57 -0.0
806,126 - PP_0693 0.57 +0.5
806,126 - PP_0693 0.57 -0.5
806,126 - PP_0693 0.57 -1.2
806,126 - PP_0693 0.57 +0.3
806,366 + PP_0693 0.66 -0.3
806,367 - PP_0693 0.66 +0.3
806,488 + PP_0693 0.70 -0.7
806,489 - PP_0693 0.70 +0.1
806,489 - PP_0693 0.70 -1.4
806,489 - PP_0693 0.70 -0.7
806,489 - PP_0693 0.70 -1.6
806,620 + PP_0693 0.75 -0.9
806,621 - PP_0693 0.75 +0.4
806,621 - PP_0693 0.75 -1.3
806,621 - PP_0693 0.75 -1.0
806,640 + PP_0693 0.76 -1.6
806,640 + PP_0693 0.76 -0.9
806,641 - PP_0693 0.76 -0.7
806,675 - PP_0693 0.77 -2.5
806,899 + PP_0693 0.85 -0.8
806,900 - PP_0693 0.85 -1.6
806,900 - PP_0693 0.85 +0.3
806,998 + PP_0693 0.88 -1.2
806,998 + PP_0693 0.88 +1.1
806,998 + PP_0693 0.88 -0.4
806,999 - PP_0693 0.88 -2.6
807,094 + -0.8
807,095 - -1.6
807,095 - -2.6
807,095 - -1.4
807,115 + -0.4
807,142 + +1.3
807,142 + -0.9
807,143 - -3.9
807,143 - -0.7
807,143 - +0.5
807,143 - -1.6
807,213 - -0.5
807,232 + -0.6
807,232 + -1.0
807,314 - +0.5
807,573 + PP_0694 0.35 -0.5
807,573 + PP_0694 0.35 -1.3
807,573 + PP_0694 0.35 -1.3
807,681 + PP_0694 0.50 +0.6
807,681 + PP_0694 0.50 +0.5
807,849 + PP_0694 0.74 -1.7
807,849 + PP_0694 0.74 +0.7
807,850 - PP_0694 0.74 -1.3
807,853 - PP_0694 0.74 -0.0
807,939 + PP_0694 0.87 -1.2
807,940 - PP_0694 0.87 -0.8
807,940 - PP_0694 0.87 -1.2
808,058 + +0.4
808,136 - +1.1
808,198 + PP_0695 0.13 -0.4
808,199 - PP_0695 0.13 -1.5
808,199 - PP_0695 0.13 -0.1

Or see this region's nucleotide sequence