Strain Fitness in Pseudomonas putida KT2440 around PP_0044

Experiment: 3-methyl-3-buten-1-ol 0.25 vol% (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0043 and PP_0044 are separated by 24 nucleotidesPP_0044 and PP_0045 are separated by 68 nucleotides PP_0043: PP_0043 - cation efflux system protein, at 46,213 to 49,374 _0043 PP_0044: PP_0044 - cobalt-zinc-cadmium resistance protein, at 49,399 to 50,649 _0044 PP_0045: PP_0045 - cobalt-zinc-cadmium resistance protein, at 50,718 to 51,989 _0045 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 48.460 kb on + strand, within PP_0043at 48.460 kb on + strand, within PP_0043at 48.460 kb on + strand, within PP_0043at 48.461 kb on - strand, within PP_0043at 48.528 kb on + strand, within PP_0043at 48.528 kb on + strand, within PP_0043at 48.528 kb on + strand, within PP_0043at 48.540 kb on + strand, within PP_0043at 48.540 kb on + strand, within PP_0043at 48.540 kb on + strand, within PP_0043at 48.552 kb on + strand, within PP_0043at 48.553 kb on - strand, within PP_0043at 48.637 kb on - strand, within PP_0043at 48.643 kb on + strand, within PP_0043at 48.644 kb on - strand, within PP_0043at 48.644 kb on - strand, within PP_0043at 48.681 kb on + strand, within PP_0043at 48.682 kb on - strand, within PP_0043at 48.758 kb on + strand, within PP_0043at 48.758 kb on + strand, within PP_0043at 48.758 kb on + strand, within PP_0043at 48.759 kb on - strand, within PP_0043at 48.819 kb on + strand, within PP_0043at 48.820 kb on - strand, within PP_0043at 48.902 kb on + strand, within PP_0043at 48.910 kb on - strand, within PP_0043at 48.910 kb on - strand, within PP_0043at 48.910 kb on - strand, within PP_0043at 48.975 kb on + strand, within PP_0043at 48.975 kb on + strand, within PP_0043at 48.976 kb on - strand, within PP_0043at 48.976 kb on - strand, within PP_0043at 48.976 kb on - strand, within PP_0043at 48.980 kb on - strand, within PP_0043at 49.000 kb on + strand, within PP_0043at 49.251 kb on + strandat 49.283 kb on + strandat 49.284 kb on - strandat 49.284 kb on - strandat 49.289 kb on + strandat 49.289 kb on + strandat 49.289 kb on + strandat 49.289 kb on + strandat 49.289 kb on + strandat 49.289 kb on + strandat 49.289 kb on + strandat 49.289 kb on + strandat 49.289 kb on + strandat 49.289 kb on + strandat 49.290 kb on - strandat 49.290 kb on - strandat 49.290 kb on - strandat 49.290 kb on - strandat 49.290 kb on - strandat 49.290 kb on - strandat 49.290 kb on - strandat 49.290 kb on - strandat 49.294 kb on - strandat 49.327 kb on + strandat 49.327 kb on + strandat 49.327 kb on + strandat 49.327 kb on + strandat 49.327 kb on + strandat 49.328 kb on - strandat 49.328 kb on - strandat 49.330 kb on + strandat 49.362 kb on + strandat 49.362 kb on + strandat 49.362 kb on + strandat 49.362 kb on + strandat 49.363 kb on - strandat 49.363 kb on - strandat 49.363 kb on - strandat 49.363 kb on - strandat 49.363 kb on - strandat 49.465 kb on + strandat 49.466 kb on - strandat 49.466 kb on - strandat 49.485 kb on + strandat 49.485 kb on + strandat 49.486 kb on - strandat 49.506 kb on - strandat 49.506 kb on - strandat 49.506 kb on - strandat 49.564 kb on + strand, within PP_0044at 49.564 kb on + strand, within PP_0044at 49.564 kb on + strand, within PP_0044at 49.565 kb on - strand, within PP_0044at 49.658 kb on - strand, within PP_0044at 49.713 kb on + strand, within PP_0044at 49.713 kb on + strand, within PP_0044at 49.713 kb on + strand, within PP_0044at 49.713 kb on + strand, within PP_0044at 49.713 kb on + strand, within PP_0044at 49.714 kb on - strand, within PP_0044at 49.714 kb on - strand, within PP_0044at 49.751 kb on + strand, within PP_0044at 49.751 kb on + strand, within PP_0044at 49.752 kb on - strand, within PP_0044at 49.752 kb on - strand, within PP_0044at 49.940 kb on - strand, within PP_0044at 49.940 kb on - strand, within PP_0044at 49.970 kb on + strand, within PP_0044at 49.992 kb on + strand, within PP_0044at 50.302 kb on - strand, within PP_0044at 50.643 kb on + strandat 50.643 kb on + strandat 50.644 kb on - strandat 50.653 kb on + strandat 50.654 kb on - strandat 50.654 kb on - strandat 50.654 kb on - strandat 50.668 kb on + strandat 50.935 kb on + strand, within PP_0045at 50.936 kb on - strand, within PP_0045at 50.936 kb on - strand, within PP_0045at 51.099 kb on - strand, within PP_0045at 51.099 kb on - strand, within PP_0045at 51.099 kb on - strand, within PP_0045at 51.099 kb on - strand, within PP_0045at 51.143 kb on - strand, within PP_0045at 51.153 kb on + strand, within PP_0045at 51.153 kb on + strand, within PP_0045at 51.153 kb on + strand, within PP_0045at 51.153 kb on + strand, within PP_0045at 51.154 kb on - strand, within PP_0045at 51.154 kb on - strand, within PP_0045at 51.154 kb on - strand, within PP_0045at 51.154 kb on - strand, within PP_0045at 51.164 kb on + strand, within PP_0045at 51.164 kb on + strand, within PP_0045at 51.164 kb on + strand, within PP_0045at 51.165 kb on - strand, within PP_0045at 51.219 kb on + strand, within PP_0045at 51.219 kb on + strand, within PP_0045at 51.220 kb on - strand, within PP_0045at 51.220 kb on - strand, within PP_0045at 51.263 kb on + strand, within PP_0045at 51.264 kb on - strandat 51.370 kb on + strand, within PP_0045at 51.371 kb on - strand, within PP_0045at 51.464 kb on + strand, within PP_0045at 51.465 kb on - strand, within PP_0045at 51.465 kb on - strand, within PP_0045at 51.465 kb on - strand, within PP_0045at 51.612 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.641 kb on - strand, within PP_0045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-3-buten-1-ol 0.25 vol% (C)
remove
48,460 + PP_0043 0.71 +0.5
48,460 + PP_0043 0.71 +0.3
48,460 + PP_0043 0.71 -0.1
48,461 - PP_0043 0.71 -0.3
48,528 + PP_0043 0.73 +2.5
48,528 + PP_0043 0.73 -0.1
48,528 + PP_0043 0.73 +1.5
48,540 + PP_0043 0.74 +0.2
48,540 + PP_0043 0.74 -1.4
48,540 + PP_0043 0.74 +0.2
48,552 + PP_0043 0.74 +1.7
48,553 - PP_0043 0.74 +0.2
48,637 - PP_0043 0.77 +0.2
48,643 + PP_0043 0.77 -0.2
48,644 - PP_0043 0.77 -0.1
48,644 - PP_0043 0.77 -1.8
48,681 + PP_0043 0.78 -0.9
48,682 - PP_0043 0.78 +0.6
48,758 + PP_0043 0.80 +0.2
48,758 + PP_0043 0.80 -0.6
48,758 + PP_0043 0.80 -0.6
48,759 - PP_0043 0.81 +0.6
48,819 + PP_0043 0.82 +1.7
48,820 - PP_0043 0.82 -0.3
48,902 + PP_0043 0.85 +0.3
48,910 - PP_0043 0.85 +0.3
48,910 - PP_0043 0.85 -0.4
48,910 - PP_0043 0.85 -1.5
48,975 + PP_0043 0.87 -0.2
48,975 + PP_0043 0.87 +0.4
48,976 - PP_0043 0.87 -0.6
48,976 - PP_0043 0.87 +2.7
48,976 - PP_0043 0.87 -1.0
48,980 - PP_0043 0.88 +0.6
49,000 + PP_0043 0.88 -0.7
49,251 + -0.7
49,283 + -0.3
49,284 - -0.7
49,284 - -0.1
49,289 + +1.9
49,289 + +0.4
49,289 + +0.5
49,289 + -0.5
49,289 + -0.6
49,289 + -1.1
49,289 + +0.1
49,289 + +0.2
49,289 + -0.5
49,289 + +0.1
49,290 - +0.2
49,290 - -0.2
49,290 - -0.7
49,290 - +0.2
49,290 - +0.1
49,290 - -0.4
49,290 - +0.1
49,290 - -0.9
49,294 - +0.9
49,327 + +1.1
49,327 + +0.4
49,327 + +0.3
49,327 + -1.3
49,327 + -0.4
49,328 - -0.1
49,328 - -0.9
49,330 + +0.7
49,362 + -0.1
49,362 + +0.5
49,362 + -0.1
49,362 + -0.0
49,363 - +0.2
49,363 - -0.2
49,363 - -0.6
49,363 - -0.6
49,363 - +0.3
49,465 + +0.4
49,466 - +1.1
49,466 - -0.2
49,485 + +0.5
49,485 + +0.2
49,486 - +0.2
49,506 - +0.2
49,506 - -0.2
49,506 - -0.2
49,564 + PP_0044 0.13 -0.1
49,564 + PP_0044 0.13 -0.1
49,564 + PP_0044 0.13 +0.8
49,565 - PP_0044 0.13 +0.5
49,658 - PP_0044 0.21 +2.3
49,713 + PP_0044 0.25 +0.7
49,713 + PP_0044 0.25 +1.5
49,713 + PP_0044 0.25 +0.9
49,713 + PP_0044 0.25 -0.0
49,713 + PP_0044 0.25 +0.2
49,714 - PP_0044 0.25 +0.7
49,714 - PP_0044 0.25 +0.2
49,751 + PP_0044 0.28 -0.3
49,751 + PP_0044 0.28 +0.4
49,752 - PP_0044 0.28 -1.1
49,752 - PP_0044 0.28 +0.2
49,940 - PP_0044 0.43 +0.7
49,940 - PP_0044 0.43 +0.0
49,970 + PP_0044 0.46 +1.4
49,992 + PP_0044 0.47 +1.0
50,302 - PP_0044 0.72 +0.7
50,643 + +0.1
50,643 + -0.2
50,644 - +0.1
50,653 + -0.4
50,654 - -0.2
50,654 - -0.7
50,654 - -0.7
50,668 + -0.3
50,935 + PP_0045 0.17 -0.6
50,936 - PP_0045 0.17 -0.5
50,936 - PP_0045 0.17 -0.8
51,099 - PP_0045 0.30 -0.9
51,099 - PP_0045 0.30 -0.6
51,099 - PP_0045 0.30 -0.3
51,099 - PP_0045 0.30 -0.1
51,143 - PP_0045 0.33 +0.4
51,153 + PP_0045 0.34 -0.0
51,153 + PP_0045 0.34 -0.4
51,153 + PP_0045 0.34 +0.3
51,153 + PP_0045 0.34 +0.4
51,154 - PP_0045 0.34 +0.5
51,154 - PP_0045 0.34 +1.1
51,154 - PP_0045 0.34 +0.0
51,154 - PP_0045 0.34 -1.1
51,164 + PP_0045 0.35 +0.4
51,164 + PP_0045 0.35 +0.1
51,164 + PP_0045 0.35 -0.2
51,165 - PP_0045 0.35 +0.3
51,219 + PP_0045 0.39 -0.3
51,219 + PP_0045 0.39 +0.1
51,220 - PP_0045 0.39 -2.8
51,220 - PP_0045 0.39 +0.4
51,263 + PP_0045 0.43 -0.1
51,264 - +2.0
51,370 + PP_0045 0.51 +0.7
51,371 - PP_0045 0.51 +0.3
51,464 + PP_0045 0.59 +0.4
51,465 - PP_0045 0.59 +1.5
51,465 - PP_0045 0.59 -0.1
51,465 - PP_0045 0.59 -0.5
51,612 + PP_0045 0.70 +0.5
51,640 + PP_0045 0.72 -0.1
51,640 + PP_0045 0.72 -0.9
51,640 + PP_0045 0.72 +0.7
51,640 + PP_0045 0.72 -0.2
51,640 + PP_0045 0.72 -0.1
51,640 + PP_0045 0.72 +0.5
51,641 - PP_0045 0.73 -0.4

Or see this region's nucleotide sequence