Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00380 and PS417_00385 overlap by 1 nucleotides PS417_00385 and PS417_00390 are separated by 67 nucleotides PS417_00390 and PS417_00395 are separated by 102 nucleotides
PS417_00380: PS417_00380 - zinc ABC transporter ATP-binding protein, at 74,245 to 75,030
_00380
PS417_00385: PS417_00385 - Fur family transcriptional regulator, at 75,030 to 75,512
_00385
PS417_00390: PS417_00390 - ABC transporter substrate-binding protein, at 75,580 to 76,500
_00390
PS417_00395: PS417_00395 - serine kinase, at 76,603 to 77,556
_00395
Position (kb) 75
76
77 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 75.347 kb on - strand, within PS417_00385 at 75.543 kb on - strand at 75.545 kb on + strand at 75.546 kb on - strand at 75.660 kb on - strand at 75.756 kb on + strand, within PS417_00390 at 75.756 kb on + strand, within PS417_00390 at 75.757 kb on - strand, within PS417_00390 at 75.760 kb on + strand, within PS417_00390 at 75.760 kb on + strand, within PS417_00390 at 75.761 kb on - strand, within PS417_00390 at 76.099 kb on - strand, within PS417_00390 at 76.174 kb on + strand, within PS417_00390 at 76.259 kb on + strand, within PS417_00390 at 76.532 kb on + strand at 76.532 kb on + strand at 76.605 kb on - strand at 76.808 kb on + strand, within PS417_00395 at 77.186 kb on - strand, within PS417_00395
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x remove 75,347 - PS417_00385 0.66 -2.7 75,543 - +0.7 75,545 + +0.5 75,546 - -1.0 75,660 - +1.1 75,756 + PS417_00390 0.19 -1.1 75,756 + PS417_00390 0.19 +0.8 75,757 - PS417_00390 0.19 -1.4 75,760 + PS417_00390 0.20 +0.3 75,760 + PS417_00390 0.20 -3.1 75,761 - PS417_00390 0.20 -0.9 76,099 - PS417_00390 0.56 -0.4 76,174 + PS417_00390 0.64 +0.3 76,259 + PS417_00390 0.74 -0.1 76,532 + -0.8 76,532 + -0.3 76,605 - +0.4 76,808 + PS417_00395 0.21 -0.3 77,186 - PS417_00395 0.61 -1.8
Or see this region's nucleotide sequence