Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03830 and PS417_03835 are separated by 300 nucleotides PS417_03835 and PS417_03840 are separated by 10 nucleotides PS417_03840 and PS417_03845 are separated by 5 nucleotides PS417_03845 and PS417_03850 are separated by 94 nucleotides PS417_03850 and PS417_03855 are separated by 192 nucleotides PS417_03855 and PS417_03865 are separated by 288 nucleotides
PS417_03830: PS417_03830 - protein disaggregation chaperone, at 863,397 to 865,961
_03830
PS417_03835: PS417_03835 - tRNA-Asn, at 866,262 to 866,337
_03835
PS417_03840: PS417_03840 - tRNA-Pro, at 866,348 to 866,424
_03840
PS417_03845: PS417_03845 - tRNA-Lys, at 866,430 to 866,505
_03845
PS417_03850: PS417_03850 - tRNA-Pro, at 866,600 to 866,676
_03850
PS417_03855: PS417_03855 - NADH dehydrogenase, at 866,869 to 868,167
_03855
PS417_03865: PS417_03865 - hypothetical protein, at 868,456 to 869,085
_03865
Position (kb) 866
867
868
869 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 865.980 kb on + strand at 866.677 kb on + strand at 866.843 kb on - strand at 866.852 kb on + strand at 866.852 kb on + strand at 866.984 kb on + strand at 866.984 kb on + strand at 866.985 kb on - strand at 866.985 kb on - strand at 867.086 kb on + strand, within PS417_03855 at 867.086 kb on + strand, within PS417_03855 at 867.087 kb on - strand, within PS417_03855 at 867.095 kb on + strand, within PS417_03855 at 867.095 kb on + strand, within PS417_03855 at 867.095 kb on + strand, within PS417_03855 at 867.096 kb on - strand, within PS417_03855 at 867.101 kb on + strand, within PS417_03855 at 867.101 kb on + strand, within PS417_03855 at 867.102 kb on - strand, within PS417_03855 at 867.191 kb on - strand, within PS417_03855 at 867.362 kb on - strand, within PS417_03855 at 867.512 kb on - strand, within PS417_03855 at 867.512 kb on - strand, within PS417_03855 at 867.512 kb on - strand, within PS417_03855 at 867.512 kb on - strand, within PS417_03855 at 867.975 kb on - strand, within PS417_03855 at 868.041 kb on + strand at 868.152 kb on + strand at 868.152 kb on + strand at 868.153 kb on - strand at 868.153 kb on - strand at 868.155 kb on + strand at 868.155 kb on + strand at 868.156 kb on - strand at 868.156 kb on - strand at 868.174 kb on - strand at 868.205 kb on + strand at 868.355 kb on + strand at 868.401 kb on + strand at 868.417 kb on + strand at 868.483 kb on + strand at 868.483 kb on + strand at 868.484 kb on - strand at 868.484 kb on - strand at 868.595 kb on + strand, within PS417_03865 at 868.700 kb on + strand, within PS417_03865 at 868.700 kb on + strand, within PS417_03865 at 868.701 kb on - strand, within PS417_03865 at 868.701 kb on - strand, within PS417_03865 at 868.704 kb on + strand, within PS417_03865 at 868.704 kb on + strand, within PS417_03865 at 869.069 kb on + strand at 869.085 kb on + strand at 869.085 kb on + strand at 869.085 kb on + strand at 869.085 kb on + strand at 869.145 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x remove 865,980 + -0.6 866,677 + -1.4 866,843 - -1.6 866,852 + +0.0 866,852 + +0.9 866,984 + -2.7 866,984 + +0.0 866,985 - -1.3 866,985 - +0.8 867,086 + PS417_03855 0.17 -0.7 867,086 + PS417_03855 0.17 -1.3 867,087 - PS417_03855 0.17 +0.5 867,095 + PS417_03855 0.17 -0.5 867,095 + PS417_03855 0.17 -1.8 867,095 + PS417_03855 0.17 -0.2 867,096 - PS417_03855 0.17 -0.6 867,101 + PS417_03855 0.18 -0.0 867,101 + PS417_03855 0.18 +0.0 867,102 - PS417_03855 0.18 -0.2 867,191 - PS417_03855 0.25 -0.6 867,362 - PS417_03855 0.38 -2.5 867,512 - PS417_03855 0.49 +0.3 867,512 - PS417_03855 0.49 -0.4 867,512 - PS417_03855 0.49 -1.2 867,512 - PS417_03855 0.49 -0.6 867,975 - PS417_03855 0.85 -0.0 868,041 + +1.7 868,152 + -3.5 868,152 + -0.4 868,153 - -2.0 868,153 - -2.2 868,155 + -1.4 868,155 + -0.7 868,156 - -0.1 868,156 - +0.6 868,174 - -0.4 868,205 + +0.8 868,355 + +1.0 868,401 + -0.2 868,417 + +0.5 868,483 + -0.2 868,483 + +0.3 868,484 - -1.0 868,484 - +0.6 868,595 + PS417_03865 0.22 +0.6 868,700 + PS417_03865 0.39 -0.1 868,700 + PS417_03865 0.39 +0.9 868,701 - PS417_03865 0.39 +0.2 868,701 - PS417_03865 0.39 -0.3 868,704 + PS417_03865 0.39 +0.2 868,704 + PS417_03865 0.39 -0.4 869,069 + +0.2 869,085 + -0.9 869,085 + -0.6 869,085 + -0.8 869,085 + +0.7 869,145 + -0.3
Or see this region's nucleotide sequence