Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00335 and PS417_00340 overlap by 13 nucleotides PS417_00340 and PS417_00345 overlap by 4 nucleotides PS417_00345 and PS417_00350 are separated by 161 nucleotides PS417_00350 and PS417_00355 are separated by 51 nucleotides
PS417_00335: PS417_00335 - cytochrome B561, at 64,938 to 66,017
_00335
PS417_00340: PS417_00340 - protoheme IX farnesyltransferase, at 66,005 to 66,904
_00340
PS417_00345: PS417_00345 - copper-binding protein, at 66,901 to 67,536
_00345
PS417_00350: PS417_00350 - methionine ABC transporter substrate-binding protein, at 67,698 to 68,468
_00350
PS417_00355: PS417_00355 - metal ABC transporter permease, at 68,520 to 69,194
_00355
Position (kb) 66
67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 65.963 kb on + strand at 65.972 kb on - strand at 65.991 kb on - strand at 66.053 kb on + strand at 66.097 kb on + strand, within PS417_00340 at 66.098 kb on - strand, within PS417_00340 at 66.157 kb on - strand, within PS417_00340 at 66.407 kb on + strand, within PS417_00340 at 66.408 kb on - strand, within PS417_00340 at 66.443 kb on - strand, within PS417_00340 at 66.443 kb on - strand, within PS417_00340 at 66.647 kb on + strand, within PS417_00340 at 66.648 kb on - strand, within PS417_00340 at 66.707 kb on + strand, within PS417_00340 at 66.708 kb on - strand, within PS417_00340 at 66.708 kb on - strand, within PS417_00340 at 66.792 kb on - strand, within PS417_00340 at 66.833 kb on + strand at 66.833 kb on + strand at 66.838 kb on + strand at 66.839 kb on - strand at 66.839 kb on - strand at 66.845 kb on + strand at 66.888 kb on - strand at 66.900 kb on + strand at 66.900 kb on + strand at 66.900 kb on + strand at 66.900 kb on + strand at 67.225 kb on - strand, within PS417_00345 at 67.408 kb on + strand, within PS417_00345 at 67.409 kb on - strand, within PS417_00345 at 67.409 kb on - strand, within PS417_00345 at 67.409 kb on - strand, within PS417_00345 at 67.530 kb on + strand at 67.530 kb on + strand at 67.530 kb on + strand at 67.531 kb on - strand at 67.531 kb on - strand at 67.535 kb on - strand at 67.727 kb on - strand at 67.834 kb on + strand, within PS417_00350 at 67.835 kb on - strand, within PS417_00350 at 68.146 kb on + strand, within PS417_00350 at 68.146 kb on + strand, within PS417_00350 at 68.286 kb on + strand, within PS417_00350 at 68.286 kb on + strand, within PS417_00350
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x remove 65,963 + -0.3 65,972 - +1.2 65,991 - +0.0 66,053 + +0.1 66,097 + PS417_00340 0.10 +0.5 66,098 - PS417_00340 0.10 -0.1 66,157 - PS417_00340 0.17 +0.2 66,407 + PS417_00340 0.45 +0.2 66,408 - PS417_00340 0.45 -0.2 66,443 - PS417_00340 0.49 -0.2 66,443 - PS417_00340 0.49 +1.0 66,647 + PS417_00340 0.71 +0.4 66,648 - PS417_00340 0.71 +3.1 66,707 + PS417_00340 0.78 -1.7 66,708 - PS417_00340 0.78 +1.1 66,708 - PS417_00340 0.78 +0.6 66,792 - PS417_00340 0.87 +0.4 66,833 + +3.6 66,833 + +1.2 66,838 + -1.1 66,839 - -1.1 66,839 - -0.2 66,845 + -0.4 66,888 - +0.6 66,900 + +0.5 66,900 + +0.7 66,900 + -0.1 66,900 + -0.8 67,225 - PS417_00345 0.51 -2.3 67,408 + PS417_00345 0.80 -1.3 67,409 - PS417_00345 0.80 -0.3 67,409 - PS417_00345 0.80 -2.9 67,409 - PS417_00345 0.80 -1.1 67,530 + +0.2 67,530 + -0.0 67,530 + -0.9 67,531 - +0.5 67,531 - -0.5 67,535 - +0.2 67,727 - -0.1 67,834 + PS417_00350 0.18 +1.2 67,835 - PS417_00350 0.18 +1.2 68,146 + PS417_00350 0.58 +0.9 68,146 + PS417_00350 0.58 -1.0 68,286 + PS417_00350 0.76 +0.2 68,286 + PS417_00350 0.76 +1.1
Or see this region's nucleotide sequence