Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02445 and PS417_02450 are separated by 108 nucleotides PS417_02450 and PS417_02455 are separated by 194 nucleotides PS417_02455 and PS417_02460 overlap by 4 nucleotides
PS417_02445: PS417_02445 - GTPase RsgA, at 560,128 to 561,159
_02445
PS417_02450: PS417_02450 - oligoribonuclease, at 561,268 to 561,810
_02450
PS417_02455: PS417_02455 - putative transporter, required for glycine utilization <small>(from data)</small>, at 562,005 to 562,619
_02455
PS417_02460: PS417_02460 - epoxyqueuosine reductase, at 562,616 to 563,680
_02460
Position (kb) 562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 561.192 kb on + strand at 561.209 kb on + strand at 561.240 kb on + strand at 561.241 kb on - strand at 561.241 kb on - strand at 561.241 kb on - strand at 562.020 kb on + strand at 562.020 kb on + strand at 562.447 kb on - strand, within PS417_02455 at 562.480 kb on - strand, within PS417_02455 at 562.480 kb on - strand, within PS417_02455 at 562.482 kb on - strand, within PS417_02455 at 562.482 kb on - strand, within PS417_02455 at 562.494 kb on + strand, within PS417_02455 at 562.600 kb on - strand at 562.618 kb on - strand at 562.828 kb on + strand, within PS417_02460 at 562.828 kb on + strand, within PS417_02460 at 562.829 kb on - strand, within PS417_02460 at 562.829 kb on - strand, within PS417_02460 at 562.829 kb on - strand, within PS417_02460 at 563.041 kb on - strand, within PS417_02460 at 563.167 kb on - strand, within PS417_02460 at 563.190 kb on - strand, within PS417_02460 at 563.379 kb on + strand, within PS417_02460 at 563.380 kb on - strand, within PS417_02460 at 563.402 kb on + strand, within PS417_02460 at 563.434 kb on - strand, within PS417_02460 at 563.434 kb on - strand, within PS417_02460 at 563.517 kb on + strand, within PS417_02460 at 563.518 kb on - strand, within PS417_02460 at 563.518 kb on - strand, within PS417_02460 at 563.518 kb on - strand, within PS417_02460
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x remove 561,192 + -0.9 561,209 + +0.3 561,240 + -0.5 561,241 - +1.1 561,241 - -1.1 561,241 - -0.2 562,020 + -0.7 562,020 + -1.6 562,447 - PS417_02455 0.72 -1.6 562,480 - PS417_02455 0.77 -2.1 562,480 - PS417_02455 0.77 -1.2 562,482 - PS417_02455 0.78 -0.1 562,482 - PS417_02455 0.78 -1.1 562,494 + PS417_02455 0.80 -2.0 562,600 - +0.9 562,618 - -0.8 562,828 + PS417_02460 0.20 -1.4 562,828 + PS417_02460 0.20 -0.1 562,829 - PS417_02460 0.20 +1.9 562,829 - PS417_02460 0.20 -0.4 562,829 - PS417_02460 0.20 -1.1 563,041 - PS417_02460 0.40 +0.1 563,167 - PS417_02460 0.52 +1.3 563,190 - PS417_02460 0.54 -0.2 563,379 + PS417_02460 0.72 -2.9 563,380 - PS417_02460 0.72 +0.3 563,402 + PS417_02460 0.74 -2.0 563,434 - PS417_02460 0.77 +1.0 563,434 - PS417_02460 0.77 +2.2 563,517 + PS417_02460 0.85 -1.6 563,518 - PS417_02460 0.85 -0.6 563,518 - PS417_02460 0.85 +0.1 563,518 - PS417_02460 0.85 -1.1
Or see this region's nucleotide sequence