Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02025 and PS417_02030 are separated by 26 nucleotides PS417_02030 and PS417_02035 overlap by 1 nucleotides PS417_02035 and PS417_02040 overlap by 4 nucleotides
PS417_02025: PS417_02025 - hypothetical protein, at 455,921 to 456,373
_02025
PS417_02030: PS417_02030 - 3-oxoacyl-ACP synthase, at 456,400 to 457,626
_02030
PS417_02035: PS417_02035 - 3-ketoacyl-ACP reductase, at 457,626 to 458,354
_02035
PS417_02040: PS417_02040 - 3-hydroxylacyl-ACP dehydratase, at 458,351 to 458,812
_02040
Position (kb) 456
457
458 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 455.868 kb on + strand at 456.045 kb on + strand, within PS417_02025 at 456.046 kb on - strand, within PS417_02025 at 456.046 kb on - strand, within PS417_02025 at 456.046 kb on - strand, within PS417_02025 at 456.072 kb on + strand, within PS417_02025 at 456.096 kb on + strand, within PS417_02025 at 456.097 kb on - strand, within PS417_02025 at 456.144 kb on + strand, within PS417_02025 at 456.467 kb on + strand at 456.503 kb on + strand at 456.557 kb on + strand, within PS417_02030 at 456.557 kb on + strand, within PS417_02030 at 456.557 kb on + strand, within PS417_02030 at 456.733 kb on + strand, within PS417_02030 at 456.734 kb on - strand, within PS417_02030 at 457.011 kb on - strand at 457.224 kb on - strand, within PS417_02030 at 457.224 kb on - strand, within PS417_02030 at 457.224 kb on - strand, within PS417_02030 at 457.669 kb on + strand at 457.670 kb on - strand at 457.897 kb on + strand, within PS417_02035 at 457.898 kb on - strand, within PS417_02035 at 457.953 kb on - strand, within PS417_02035 at 458.009 kb on - strand, within PS417_02035 at 458.114 kb on - strand, within PS417_02035 at 458.378 kb on + strand at 458.379 kb on - strand at 458.408 kb on + strand, within PS417_02040 at 458.408 kb on + strand, within PS417_02040 at 458.409 kb on - strand, within PS417_02040 at 458.409 kb on - strand, within PS417_02040
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x remove 455,868 + -0.1 456,045 + PS417_02025 0.27 -1.5 456,046 - PS417_02025 0.28 +0.2 456,046 - PS417_02025 0.28 +2.6 456,046 - PS417_02025 0.28 +3.2 456,072 + PS417_02025 0.33 +0.4 456,096 + PS417_02025 0.39 -0.1 456,097 - PS417_02025 0.39 -0.5 456,144 + PS417_02025 0.49 -0.9 456,467 + +1.4 456,503 + -0.4 456,557 + PS417_02030 0.13 +0.4 456,557 + PS417_02030 0.13 -1.1 456,557 + PS417_02030 0.13 -0.7 456,733 + PS417_02030 0.27 -1.1 456,734 - PS417_02030 0.27 -0.4 457,011 - +3.2 457,224 - PS417_02030 0.67 -2.5 457,224 - PS417_02030 0.67 -1.7 457,224 - PS417_02030 0.67 -2.2 457,669 + +2.2 457,670 - -1.1 457,897 + PS417_02035 0.37 -0.9 457,898 - PS417_02035 0.37 +1.0 457,953 - PS417_02035 0.45 -1.5 458,009 - PS417_02035 0.53 +0.9 458,114 - PS417_02035 0.67 +0.2 458,378 + +0.2 458,379 - -0.4 458,408 + PS417_02040 0.12 -0.7 458,408 + PS417_02040 0.12 +0.1 458,409 - PS417_02040 0.13 +0.5 458,409 - PS417_02040 0.13 -0.1
Or see this region's nucleotide sequence