Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01055 and PS417_01060 are separated by 423 nucleotides PS417_01060 and PS417_01065 overlap by 11 nucleotides
PS417_01055: PS417_01055 - methyltransferase, at 231,510 to 232,136
_01055
PS417_01060: PS417_01060 - ABC transporter permease, at 232,560 to 233,204
_01060
PS417_01065: PS417_01065 - ABC transporter, at 233,194 to 234,309
_01065
Position (kb) 232
233
234 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 231.574 kb on + strand, within PS417_01055 at 231.577 kb on + strand, within PS417_01055 at 231.577 kb on + strand, within PS417_01055 at 231.577 kb on + strand, within PS417_01055 at 231.578 kb on - strand, within PS417_01055 at 231.578 kb on - strand, within PS417_01055 at 231.992 kb on + strand, within PS417_01055 at 232.082 kb on - strand at 232.166 kb on + strand at 232.166 kb on + strand at 232.166 kb on + strand at 232.166 kb on + strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.168 kb on + strand at 232.168 kb on + strand at 232.168 kb on + strand at 232.169 kb on - strand at 232.244 kb on - strand at 232.284 kb on + strand at 232.284 kb on + strand at 232.285 kb on - strand at 232.285 kb on - strand at 232.285 kb on - strand at 232.302 kb on + strand at 232.313 kb on + strand at 232.313 kb on + strand at 232.314 kb on - strand at 232.314 kb on - strand at 232.315 kb on + strand at 232.315 kb on + strand at 232.316 kb on - strand at 232.316 kb on - strand at 232.321 kb on + strand at 232.321 kb on + strand at 232.349 kb on + strand at 232.349 kb on + strand at 232.350 kb on - strand at 232.350 kb on - strand at 232.557 kb on + strand at 232.558 kb on - strand at 232.558 kb on - strand at 232.955 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.079 kb on - strand, within PS417_01060 at 233.079 kb on - strand, within PS417_01060 at 233.320 kb on - strand, within PS417_01065
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x remove 231,574 + PS417_01055 0.10 +0.1 231,577 + PS417_01055 0.11 -0.1 231,577 + PS417_01055 0.11 +0.7 231,577 + PS417_01055 0.11 +1.1 231,578 - PS417_01055 0.11 +0.4 231,578 - PS417_01055 0.11 -0.5 231,992 + PS417_01055 0.77 -0.0 232,082 - +0.2 232,166 + -0.0 232,166 + +0.2 232,166 + +0.6 232,166 + -0.8 232,167 - -0.0 232,167 - -0.4 232,167 - -1.8 232,167 - -0.8 232,167 - +0.4 232,168 + -1.1 232,168 + -0.6 232,168 + -0.1 232,169 - +0.3 232,244 - +1.1 232,284 + -1.6 232,284 + +0.5 232,285 - +0.2 232,285 - +0.0 232,285 - -1.0 232,302 + +0.4 232,313 + -2.5 232,313 + -1.0 232,314 - +0.5 232,314 - +0.1 232,315 + -0.3 232,315 + -0.4 232,316 - +0.0 232,316 - -0.5 232,321 + +0.3 232,321 + +0.8 232,349 + -3.2 232,349 + +0.3 232,350 - +0.8 232,350 - +1.1 232,557 + +0.2 232,558 - +1.0 232,558 - -1.6 232,955 - PS417_01060 0.61 +0.9 233,075 - PS417_01060 0.80 +1.8 233,075 - PS417_01060 0.80 +0.3 233,075 - PS417_01060 0.80 +0.5 233,075 - PS417_01060 0.80 -3.8 233,078 + PS417_01060 0.80 +3.2 233,078 + PS417_01060 0.80 +0.6 233,078 + PS417_01060 0.80 -0.1 233,079 - PS417_01060 0.80 -0.1 233,079 - PS417_01060 0.80 +0.4 233,320 - PS417_01065 0.11 +0.2
Or see this region's nucleotide sequence