Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06250 and PS417_06255 are separated by 45 nucleotides PS417_06255 and PS417_06260 are separated by 3 nucleotides PS417_06260 and PS417_06265 are separated by 111 nucleotides PS417_06265 and PS417_06270 overlap by 4 nucleotides
PS417_06250: PS417_06250 - membrane protein, at 1,386,328 to 1,388,715
_06250
PS417_06255: PS417_06255 - Skp, at 1,388,761 to 1,389,264
_06255
PS417_06260: PS417_06260 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, at 1,389,268 to 1,390,323
_06260
PS417_06265: PS417_06265 - 3-hydroxyacyl-ACP dehydratase, at 1,390,435 to 1,390,875
_06265
PS417_06270: PS417_06270 - UDP-N-acetylglucosamine acyltransferase, at 1,390,872 to 1,391,648
_06270
Position (kb) 1389
1390
1391 Strain fitness (log2 ratio) -2
-1
0
1 at 1388.755 kb on + strand at 1388.766 kb on + strand at 1390.392 kb on + strand at 1390.392 kb on + strand at 1390.392 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x remove 1,388,755 + -2.1 1,388,766 + -1.8 1,390,392 + -1.2 1,390,392 + +1.4 1,390,392 + +0.6
Or see this region's nucleotide sequence