Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06245 and PS417_06250 are separated by 74 nucleotides PS417_06250 and PS417_06255 are separated by 45 nucleotides PS417_06255 and PS417_06260 are separated by 3 nucleotides
PS417_06245: PS417_06245 - zinc metallopeptidase RseP, at 1,384,901 to 1,386,253
_06245
PS417_06250: PS417_06250 - membrane protein, at 1,386,328 to 1,388,715
_06250
PS417_06255: PS417_06255 - Skp, at 1,388,761 to 1,389,264
_06255
PS417_06260: PS417_06260 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, at 1,389,268 to 1,390,323
_06260
Position (kb) 1386
1387
1388
1389 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1385.356 kb on + strand, within PS417_06245 at 1385.544 kb on + strand, within PS417_06245 at 1385.545 kb on - strand, within PS417_06245 at 1386.219 kb on + strand at 1388.755 kb on + strand at 1388.766 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x remove 1,385,356 + PS417_06245 0.34 -2.4 1,385,544 + PS417_06245 0.48 -2.7 1,385,545 - PS417_06245 0.48 -2.9 1,386,219 + -0.5 1,388,755 + -2.1 1,388,766 + -1.8
Or see this region's nucleotide sequence