Strain Fitness in Pseudomonas putida KT2440 around PP_5639

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
4,378,033	+		PP_5638	0.73	-0.4
4,378,034	-		PP_5638	0.73	+0.8
4,378,115	+		PP_5638	0.88	-0.6
4,378,258	+		PP_3854	0.16	+1.7
4,378,258	+		PP_3854	0.16	-1.6
4,378,258	+		PP_3854	0.16	-1.2
4,378,259	-		PP_3854	0.16	-0.4
4,378,456	+		PP_3854	0.52	-1.4
4,378,456	+		PP_3854	0.52	+1.0
4,378,456	+		PP_3854	0.52	-0.3
4,378,456	+		PP_3854	0.52	-0.9
4,378,457	-		PP_3854	0.53	+0.1
4,378,457	-		PP_3854	0.53	+1.1
4,378,519	+		PP_3854	0.64	+0.2
4,378,519	-		PP_3854	0.64	+0.3
4,378,520	-		PP_3854	0.64	-0.6
4,378,528	+		PP_3854	0.66	-0.4
4,378,567	+		PP_3854	0.73	-0.4
4,378,568	-		PP_3854	0.73	+0.7
4,378,609	+		PP_3854	0.81	-0.5
4,378,610	-		PP_3854	0.81	-0.5
4,378,610	-		PP_3854	0.81	+2.0
4,378,659	+				-0.8
4,378,660	-				+0.1
4,378,704	-				+0.0
4,378,704	-				-0.5
4,378,757	+				-0.1
4,378,757	+				+0.4
4,378,764	+				+0.2
4,378,769	+				+0.2
4,378,811	+				-0.4
4,378,811	+				-0.0
4,378,811	+				-0.7
4,378,812	-				-2.7
4,378,812	-				-2.7
4,378,812	-				-2.8
4,378,812	-				-2.0
4,378,812	-				-2.4
4,378,841	+		PP_5639	0.11	-0.6
4,378,915	+		PP_5639	0.31	-0.6
4,378,939	+		PP_5639	0.37	+0.3
4,378,939	+		PP_5639	0.37	-0.2
4,378,940	-		PP_5639	0.38	-1.8
4,378,940	-		PP_5639	0.38	-0.9
4,378,940	-		PP_5639	0.38	-1.3
4,378,940	-		PP_5639	0.38	-2.4
4,378,940	-		PP_5639	0.38	-2.3
4,378,941	+		PP_5639	0.38	-0.5
4,378,955	-		PP_5639	0.42	-2.4
4,378,971	-		PP_5639	0.46	-2.4
4,378,971	-		PP_5639	0.46	-2.0
4,378,971	-		PP_5639	0.46	-2.0
4,378,995	-		PP_5639	0.53	-1.5
4,378,995	-		PP_5639	0.53	+0.1
4,379,008	+		PP_5639	0.56	+0.7
4,379,074	+		PP_5639	0.74	+0.4
4,379,075	-		PP_5639	0.74	-2.8
4,379,075	-		PP_5639	0.74	-1.7
4,379,083	+		PP_5639	0.76	-0.2
4,379,083	+		PP_5639	0.76	-0.0
4,379,084	-		PP_5639	0.77	-2.5
4,379,084	-		PP_5639	0.77	-1.7
4,379,084	-		PP_5639	0.77	-2.5
4,379,084	-		PP_5639	0.77	-2.5
4,379,084	-		PP_5639	0.77	-2.4
4,379,084	-		PP_5639	0.77	-3.1
4,379,090	+		PP_5639	0.78	+0.2
4,379,090	+		PP_5639	0.78	+0.2
4,379,091	-		PP_5639	0.79	-2.4
4,379,105	+		PP_5639	0.82	-0.0
4,379,179	+		PP_3855	0.29	+0.0
4,379,187	+		PP_3855	0.32	+0.9
4,379,187	+		PP_3855	0.32	+0.6
4,379,198	+		PP_3855	0.37	+0.4
4,379,198	+		PP_3855	0.37	-0.4
4,379,199	-		PP_3855	0.38	-2.8
4,379,213	+		PP_3855	0.44	+1.0
4,379,213	+		PP_3855	0.44	-0.6
4,379,213	+		PP_3855	0.44	+0.7
4,379,214	-		PP_3855	0.44	-1.5
4,379,214	-		PP_3855	0.44	-1.6
4,379,257	+		PP_3855	0.64	+0.6
4,379,305	-		PP_3855	0.85	-1.5
4,379,354	+				-0.3
4,379,421	+				-0.2
4,379,442	-				-2.2
4,379,468	-				-1.6
4,379,483	-				-2.4
4,379,508	-				-1.7
4,379,542	+				-0.4
4,379,542	+				+0.3
4,379,542	+				-0.1
4,379,543	-				-2.1
4,379,543	-				-1.5
4,379,543	-				-2.1
4,379,572	+				+0.0
4,379,572	+				+1.1
4,379,572	+				+0.3
4,379,573	-				-3.8
4,379,573	-				-1.9
4,379,574	-				-2.9
4,379,580	+				+0.0
4,379,580	+				+0.1
4,379,580	+				-0.0
4,379,580	+				+0.7
4,379,580	+				+0.5
4,379,581	-				-1.8
4,379,581	-				-1.7
4,379,582	+				+0.9
4,379,583	-				-0.2
4,379,631	+				-0.3
4,379,631	+				+0.0
4,379,632	-				-0.9
4,379,632	-				-1.9
4,379,695	-				-0.3
4,379,695	-				-0.1
4,379,740	+				-0.7
4,379,763	-				-1.0
4,379,763	-				-0.3
4,379,766	-				-0.3
4,379,783	+				-0.0
4,379,784	-				+0.2
4,379,784	-				-0.5
4,379,791	+				+1.1
4,379,791	+				-0.2
4,379,866	-		PP_3856	0.14	+0.4
4,379,880	+		PP_3856	0.16	-0.2
4,379,881	-		PP_3856	0.16	+0.2
4,379,881	-		PP_3856	0.16	-0.1
4,379,881	-		PP_3856	0.16	+0.2
4,379,881	-		PP_3856	0.16	-0.4
4,379,968	+		PP_3856	0.27	-0.8
4,379,972	+				-1.2
4,379,973	-		PP_3856	0.28	+0.7
4,379,973	-		PP_3856	0.28	+0.2
4,379,986	-		PP_3856	0.29	+0.5
4,380,002	+		PP_3856	0.32	-0.4
4,380,003	-				-0.5
4,380,053	+		PP_3856	0.38	-0.1
4,380,053	+				+2.7
4,380,054	-		PP_3856	0.38	-0.9
4,380,125	+		PP_3856	0.48	-1.7
4,380,125	+		PP_3856	0.48	+0.9
4,380,125	+		PP_3856	0.48	-0.6
4,380,125	+		PP_3856	0.48	+0.8
4,380,125	+		PP_3856	0.48	-0.1
4,380,126	-		PP_3856	0.48	+1.3