Strain Fitness in Pseudomonas putida KT2440 around PP_5538

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
3,056,603	-		PP_2669	0.25	-4.1
3,056,603	-		PP_2669	0.25	-2.1
3,056,603	-		PP_2669	0.25	-2.2
3,056,712	+		PP_2669	0.36	-1.4
3,056,713	-		PP_2669	0.36	-2.3
3,056,994	+		PP_2669	0.64	-1.7
3,056,995	-		PP_2669	0.64	-2.6
3,056,998	+		PP_2669	0.65	-3.9
3,056,998	+		PP_2669	0.65	-2.1
3,056,999	-		PP_2669	0.65	-3.3
3,056,999	-		PP_2669	0.65	-3.2
3,057,125	-		PP_2669	0.77	-2.2
3,057,359	+				-1.1
3,057,359	+				-2.8
3,057,360	-				-0.9
3,057,360	-				+0.1
3,057,386	-				+0.7
3,057,389	+				-2.2
3,057,389	+				-3.4
3,057,389	+				-2.1
3,057,389	+				-2.3
3,057,390	-				+0.8
3,057,412	+				-0.2
3,057,856	-		PP_5538	0.40	-1.1
3,057,856	-		PP_5538	0.40	-3.8
3,057,856	-		PP_5538	0.40	-2.6
3,057,998	-		PP_5538	0.52	-1.5
3,058,106	+		PP_5538	0.61	-3.4
3,058,106	+		PP_5538	0.61	-3.5
3,058,107	-				+0.8
3,058,346	+		PP_5538	0.81	-3.8
3,058,346	+		PP_5538	0.81	-2.4
3,058,347	-		PP_5538	0.81	-2.4
3,058,347	-		PP_5538	0.81	-1.1
3,058,347	-		PP_5538	0.81	-1.6
3,058,347	-		PP_5538	0.81	-1.9
3,058,462	-				-1.4
3,058,462	-				-1.7
3,058,462	-				-1.9
3,058,572	-				-1.6
3,058,601	+				-1.6
3,058,601	+				-1.8
3,058,601	+				-2.0
3,058,601	+				-2.8
3,058,601	+				-2.1
3,058,602	-				-1.2
3,058,627	-				-2.2
3,058,627	-				-1.6
3,058,659	+				-0.3
3,058,659	+				-0.3
3,058,659	+				+0.1
3,058,659	+				-1.2
3,058,659	+				-1.9
3,058,687	+				+0.5
3,058,688	-				+0.4
3,058,688	-				-0.4
3,058,774	+				-0.2
3,058,774	+				+0.3
3,058,775	-				-0.1
3,058,876	-		PP_2671	0.12	-0.2
3,059,411	+		PP_2671	0.54	-0.2
3,059,411	+		PP_2671	0.54	+0.2
3,059,411	+		PP_2671	0.54	-0.6
3,059,412	-		PP_2671	0.54	+0.4
3,059,451	+		PP_2671	0.57	+1.3
3,059,451	+		PP_2671	0.57	-0.5
3,059,452	-		PP_2671	0.57	-0.6
3,059,477	-		PP_2671	0.59	-0.7
3,059,477	-		PP_2671	0.59	+0.7
3,059,477	-		PP_2671	0.59	+0.1
3,059,477	-		PP_2671	0.59	-0.7
3,059,489	+		PP_2671	0.60	-0.6
3,059,489	+		PP_2671	0.60	-0.5
3,059,490	-		PP_2671	0.60	-0.2