Strain Fitness in Pseudomonas putida KT2440 around PP_4565

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
5,183,766	+				-0.2
5,183,767	-				-0.2
5,183,767	-				-0.4
5,183,831	+				+0.5
5,183,831	+				+1.3
5,183,832	-				+0.3
5,183,832	-				+0.8
5,183,832	-				-0.3
5,183,871	+				-0.2
5,183,872	-				-0.4
5,183,893	+				+0.6
5,184,103	-		PP_4564	0.28	+0.1
5,184,246	+		PP_4564	0.44	+0.5
5,184,247	-		PP_4564	0.44	-0.5
5,184,299	+		PP_4564	0.51	+0.3
5,184,299	+		PP_4564	0.51	+0.6
5,184,299	+		PP_4564	0.51	-0.0
5,184,300	-		PP_4564	0.51	+0.3
5,184,300	-		PP_4564	0.51	-0.6
5,184,795	+				-2.0
5,184,795	+				-1.7
5,184,821	-				-1.4
5,184,821	-				-2.1
5,184,833	-				-0.1
5,184,833	-				-3.3
5,184,833	-				-0.9
5,184,833	-				-1.3
5,184,935	-		PP_4565	0.11	-1.0
5,185,024	+		PP_4565	0.16	-1.0
5,185,031	-		PP_4565	0.17	-1.3
5,185,031	-		PP_4565	0.17	-2.0
5,185,031	-		PP_4565	0.17	-1.6
5,185,129	+		PP_4565	0.22	-1.4
5,185,130	-		PP_4565	0.22	-1.1
5,185,177	+		PP_4565	0.25	-0.5
5,185,178	-		PP_4565	0.25	-1.3
5,185,381	+		PP_4565	0.37	-0.4
5,185,381	+		PP_4565	0.37	-0.6
5,185,381	+		PP_4565	0.37	-1.5
5,185,381	+		PP_4565	0.37	-1.0
5,185,382	-		PP_4565	0.37	-2.6
5,185,454	+		PP_4565	0.41	-1.0
5,185,455	-		PP_4565	0.41	-2.0
5,185,558	+		PP_4565	0.47	-0.9
5,185,582	+		PP_4565	0.49	-0.6
5,185,582	+		PP_4565	0.49	-0.5
5,185,583	-		PP_4565	0.49	-1.6
5,185,598	+		PP_4565	0.50	-1.4
5,185,599	-		PP_4565	0.50	-2.0
5,185,599	-		PP_4565	0.50	-3.0
5,185,600	+		PP_4565	0.50	-1.4
5,185,600	+		PP_4565	0.50	-0.9
5,185,600	+		PP_4565	0.50	-1.7
5,185,600	+		PP_4565	0.50	-0.3
5,185,600	+		PP_4565	0.50	-0.4
5,185,601	-		PP_4565	0.50	-1.3
5,185,601	-		PP_4565	0.50	-0.2
5,185,601	-		PP_4565	0.50	-0.5
5,185,601	-		PP_4565	0.50	-1.5
5,185,601	-		PP_4565	0.50	+0.1
5,185,601	-		PP_4565	0.50	-0.4
5,185,601	-		PP_4565	0.50	-1.8
5,185,601	-		PP_4565	0.50	-0.4
5,185,601	-		PP_4565	0.50	-0.3
5,185,684	+		PP_4565	0.55	-1.3
5,185,684	+		PP_4565	0.55	-2.2
5,185,684	+		PP_4565	0.55	-1.0
5,185,810	+		PP_4565	0.62	-1.3
5,185,810	+		PP_4565	0.62	-1.0
5,185,811	-		PP_4565	0.62	-1.6
5,185,828	+		PP_4565	0.63	-1.6
5,185,829	-		PP_4565	0.63	-0.4
5,185,829	-		PP_4565	0.63	-1.1
5,185,829	-		PP_4565	0.63	-0.6
5,186,029	+		PP_4565	0.75	-2.1
5,186,030	-		PP_4565	0.75	-1.4
5,186,033	+		PP_4565	0.75	-0.5
5,186,034	-		PP_4565	0.75	-1.6
5,186,034	-		PP_4565	0.75	-1.8
5,186,034	-		PP_4565	0.75	-1.6
5,186,195	+		PP_4565	0.85	-1.1
5,186,196	-		PP_4565	0.85	-1.4
5,186,198	-		PP_4565	0.85	-1.0
5,186,296	+				-1.2
5,186,297	-				-1.5
5,186,488	-				-1.6
5,186,488	-				-0.5
5,186,519	+				-0.2
5,186,544	-				+0.7
5,186,544	-				+0.4
5,186,544	-				+0.6
5,186,544	-				-1.7
5,186,587	+				-0.2
5,186,587	+				+0.7
5,186,588	-				+0.5
5,186,628	+				+0.4
5,186,628	+				-0.3
5,186,647	+				-0.0
5,186,647	+				+1.3
5,186,813	-				-1.3
5,186,992	+		PP_4566	0.37	+0.0
5,186,992	+		PP_4566	0.37	+0.8
5,186,992	+		PP_4566	0.37	+1.3
5,186,993	-		PP_4566	0.38	+0.8
5,186,993	-		PP_4566	0.38	+0.7
5,186,993	-		PP_4566	0.38	+0.2
5,187,348	+		PP_4566	0.78	+0.4
5,187,348	+		PP_4566	0.78	-0.2
5,187,348	+		PP_4566	0.78	-0.0
5,187,349	-		PP_4566	0.78	+0.2
5,187,349	-		PP_4566	0.78	+1.0
5,187,356	+		PP_4566	0.79	+1.4
5,187,357	+		PP_4566	0.79	-0.3
5,187,388	+		PP_4566	0.83	-0.2
5,187,430	+		PP_4566	0.87	+0.1
5,187,430	+		PP_4566	0.87	-0.4
5,187,431	-		PP_4566	0.88	+0.9
5,187,431	-		PP_4566	0.88	-1.2