Strain Fitness in Pseudomonas putida KT2440 around PP_4114

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
4,650,078	+		PP_4113	0.51	+0.3
4,650,078	+		PP_4113	0.51	+0.4
4,650,078	+		PP_4113	0.51	-0.6
4,650,115	-		PP_4113	0.53	+0.2
4,650,219	+		PP_4113	0.59	+0.4
4,650,219	+		PP_4113	0.59	-0.0
4,650,220	-		PP_4113	0.59	-0.4
4,650,414	+		PP_4113	0.71	-0.3
4,650,415	-		PP_4113	0.71	-0.5
4,650,456	+		PP_4113	0.73	-0.2
4,650,461	-		PP_4113	0.74	-0.4
4,650,495	+		PP_4113	0.75	-0.2
4,650,531	+		PP_4113	0.78	+0.0
4,650,531	+		PP_4113	0.78	-0.6
4,650,531	+		PP_4113	0.78	-0.6
4,650,531	+		PP_4113	0.78	-0.1
4,650,531	+		PP_4113	0.78	+0.1
4,650,531	+		PP_4113	0.78	+0.1
4,650,532	-		PP_4113	0.78	+0.3
4,650,532	-		PP_4113	0.78	+0.0
4,650,532	-		PP_4113	0.78	-0.2
4,650,532	-		PP_4113	0.78	+0.5
4,650,532	-		PP_4113	0.78	-0.7
4,650,532	-		PP_4113	0.78	-0.4
4,650,747	-				+0.1
4,650,887	+				+0.4
4,650,888	-				+0.2
4,650,948	+				+2.1
4,651,034	+				+0.7
4,651,058	-				+0.8
4,651,097	-		PP_4114	0.11	-0.8
4,651,097	-		PP_4114	0.11	+0.6
4,651,173	+		PP_4114	0.18	+0.4
4,651,222	+		PP_4114	0.22	+0.3
4,651,222	+		PP_4114	0.22	-0.8
4,651,223	-		PP_4114	0.22	+0.2
4,651,223	-		PP_4114	0.22	-1.8
4,651,223	-		PP_4114	0.22	-0.3
4,651,245	+		PP_4114	0.24	+0.1
4,651,245	+		PP_4114	0.24	-0.2
4,651,246	-		PP_4114	0.24	-0.0
4,651,246	-		PP_4114	0.24	+1.0
4,651,353	+		PP_4114	0.33	-0.2
4,651,412	+		PP_4114	0.38	+0.0
4,651,412	+		PP_4114	0.38	-0.0
4,651,412	+		PP_4114	0.38	+0.9
4,651,412	+		PP_4114	0.38	-0.3
4,651,412	+		PP_4114	0.38	+1.0
4,651,413	-		PP_4114	0.38	+0.0
4,651,413	-		PP_4114	0.38	-0.8
4,651,487	+		PP_4114	0.44	+1.7
4,651,488	-		PP_4114	0.44	+0.0
4,651,488	-		PP_4114	0.44	+1.4
4,651,488	-		PP_4114	0.44	+0.0
4,651,488	-		PP_4114	0.44	+0.4
4,651,578	+		PP_4114	0.52	+0.2
4,651,579	-		PP_4114	0.52	+0.1
4,651,579	-		PP_4114	0.52	+0.2
4,651,579	-		PP_4114	0.52	+0.2
4,651,665	+		PP_4114	0.59	-1.6
4,651,665	+		PP_4114	0.59	-0.2
4,651,666	-		PP_4114	0.59	-0.3
4,651,714	+		PP_4114	0.64	+0.3
4,651,714	+		PP_4114	0.64	+0.5
4,651,714	+		PP_4114	0.64	+0.4
4,651,715	-		PP_4114	0.64	+0.9
4,651,717	+		PP_4114	0.64	+1.0
4,651,717	+		PP_4114	0.64	+0.4
4,651,717	+		PP_4114	0.64	+0.1
4,651,717	+		PP_4114	0.64	+0.0
4,651,718	-		PP_4114	0.64	+1.0
4,651,718	-		PP_4114	0.64	+0.3
4,651,718	-		PP_4114	0.64	+0.3
4,651,732	+		PP_4114	0.65	+1.5
4,651,733	-		PP_4114	0.65	+0.0
4,651,733	-		PP_4114	0.65	+1.5
4,651,768	-		PP_4114	0.68	-0.0
4,652,058	-				+0.5
4,652,058	-				-0.5
4,652,119	+				+1.5
4,652,148	+				+1.2
4,652,148	+				+1.6
4,652,149	-				-1.2
4,652,185	-				+0.5
4,652,185	-				+0.3
4,652,205	-				+0.0
4,652,610	+				+0.5
4,652,647	+		PP_4115	0.52	+0.5
4,652,648	-		PP_4115	0.52	-1.9
4,652,725	-		PP_4115	0.62	+0.7
4,652,775	+		PP_4115	0.68	+0.2
4,652,775	+		PP_4115	0.68	-0.3
4,652,775	+		PP_4115	0.68	+0.3
4,652,775	+		PP_4115	0.68	+0.0
4,652,775	+				+0.2
4,652,775	+		PP_4115	0.68	+0.4
4,652,819	-		PP_4115	0.73	-0.4
4,652,973	+				+0.3
4,652,973	+				+0.8
4,652,973	+				+0.1
4,652,974	-				+0.3
4,652,974	-				+0.7
4,652,974	-				+0.0
4,652,974	-				-0.1
4,653,089	+				+0.9
4,653,090	-				-0.1
4,653,102	+				+0.7
4,653,103	-				+0.2
4,653,103	-				+1.4
4,653,103	-				+0.2
4,653,103	-				-0.1
4,653,103	-				+1.2
4,653,103	-				-0.8
4,653,105	+				-0.7