Strain Fitness in Pseudomonas putida KT2440 around PP_4067

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
4,590,792	+				-3.9
4,590,793	-				-3.5
4,590,796	-				-3.9
4,590,796	-				-4.7
4,591,213	-		PP_4066	0.35	-3.8
4,591,345	+		PP_4066	0.51	+0.2
4,591,345	+		PP_4066	0.51	-0.4
4,591,346	-		PP_4066	0.51	-0.8
4,591,420	-		PP_4066	0.60	-2.4
4,591,485	+		PP_4066	0.68	+1.2
4,591,486	-		PP_4066	0.68	-4.2
4,591,526	-		PP_4066	0.73	-4.0
4,591,931	+				-3.5
4,592,357	+		PP_4067	0.31	-3.9
4,592,421	-		PP_4067	0.35	-4.4
4,592,555	+		PP_4067	0.42	-3.9
4,592,736	+		PP_4067	0.51	-3.9
4,592,764	-		PP_4067	0.52	-3.8
4,592,764	-		PP_4067	0.52	-2.5
4,592,764	-		PP_4067	0.52	-3.2
4,592,772	-		PP_4067	0.53	-2.6
4,592,818	-		PP_4067	0.55	-4.3
4,592,825	+		PP_4067	0.55	-3.9
4,592,825	+		PP_4067	0.55	-0.8
4,592,900	+		PP_4067	0.59	-5.0
4,592,901	-		PP_4067	0.59	-2.4
4,593,067	+		PP_4067	0.68	-3.2
4,593,217	+		PP_4067	0.76	-5.3
4,593,218	-		PP_4067	0.76	-4.2
4,593,218	-		PP_4067	0.76	-2.5
4,593,314	-		PP_4067	0.80	-5.0
4,593,401	+		PP_4067	0.85	-5.3
4,593,402	-		PP_4067	0.85	-5.0
4,593,511	+				-3.9
4,593,570	+				-5.1
4,593,652	+				-3.5
4,593,653	-				-4.0
4,593,692	+				-1.5
4,593,693	-				+0.3
4,593,693	-				-0.4
4,593,693	-				+0.2
4,593,756	+				-0.4
4,593,856	+				-0.1
4,593,907	+				-0.4
4,593,908	-				+0.1
4,593,908	-				+0.2
4,593,908	-				+0.1
4,594,067	+		PP_4068	0.10	+0.1
4,594,067	+		PP_4068	0.10	+0.7
4,594,068	-		PP_4068	0.11	+0.5
4,594,068	-		PP_4068	0.11	+0.2
4,594,068	-		PP_4068	0.11	-0.4
4,594,068	-		PP_4068	0.11	-0.7
4,594,177	-		PP_4068	0.26	-0.2
4,594,177	-		PP_4068	0.26	-0.6
4,594,314	+		PP_4068	0.46	+0.1
4,594,407	+		PP_4068	0.59	-0.6
4,594,421	+		PP_4068	0.61	-2.6
4,594,421	+		PP_4068	0.61	-0.3
4,594,421	+		PP_4068	0.61	-1.5
4,594,422	-		PP_4068	0.61	+0.4
4,594,422	-		PP_4068	0.61	+0.8
4,594,471	+		PP_4068	0.68	-0.2
4,594,472	-		PP_4068	0.68	+1.0
4,594,472	-		PP_4068	0.68	-0.2
4,594,472	-		PP_4068	0.68	-0.9
4,594,472	-		PP_4068	0.68	+2.5
4,594,472	-		PP_4068	0.68	+0.4
4,594,605	+		PP_4068	0.87	+0.0
4,594,605	+		PP_4068	0.87	-0.4
4,594,606	-		PP_4068	0.87	-0.1
4,594,606	-		PP_4068	0.87	-0.1
4,594,606	-		PP_4068	0.87	+0.5
4,594,606	-		PP_4068	0.87	-0.5
4,594,643	+				-0.5
4,594,643	+				+0.8
4,594,644	-				+1.0
4,594,644	-				-0.1
4,594,644	-				-0.7
4,594,649	+				+0.1
4,594,649	+				-0.1
4,594,650	-				+0.1
4,594,650	-				-0.0
4,594,668	-				+0.7