Strain Fitness in Pseudomonas putida KT2440 around PP_3739

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
4,265,810	-				-2.1
4,265,903	+		PP_3738	0.22	+0.2
4,265,903	+		PP_3738	0.22	+0.4
4,265,904	-		PP_3738	0.22	-0.2
4,265,904	-		PP_3738	0.22	+0.2
4,266,073	+		PP_3738	0.46	+0.9
4,266,074	-		PP_3738	0.46	-0.9
4,266,492	+				+0.6
4,266,526	+				-1.4
4,266,526	+				+0.2
4,266,526	+				-1.0
4,266,526	+				-0.0
4,266,527	-				+0.8
4,266,605	+				+0.2
4,266,621	-				+0.3
4,266,621	-				-1.0
4,266,728	+				+1.1
4,266,728	+				+0.1
4,266,728	+				-0.5
4,266,729	-				-0.3
4,266,729	-				+1.0
4,266,729	-				+1.8
4,266,851	+		PP_3739	0.20	+0.1
4,266,852	-		PP_3739	0.20	-0.8
4,266,858	-		PP_3739	0.20	+0.1
4,266,989	+				-1.5
4,266,989	+		PP_3739	0.31	-0.7
4,266,989	+		PP_3739	0.31	+0.0
4,266,989	+		PP_3739	0.31	+0.7
4,266,989	+		PP_3739	0.31	-0.2
4,267,148	+		PP_3739	0.43	+2.1
4,267,149	-		PP_3739	0.43	-0.7
4,267,160	+		PP_3739	0.44	+0.0
4,267,160	+		PP_3739	0.44	+0.1
4,267,160	+		PP_3739	0.44	+0.7
4,267,161	-		PP_3739	0.44	-0.4
4,267,235	+		PP_3739	0.50	-0.7
4,267,280	-		PP_3739	0.54	+0.1
4,267,280	-		PP_3739	0.54	-0.2
4,267,412	+		PP_3739	0.64	-0.6
4,267,470	+		PP_3739	0.69	-1.1
4,267,470	+		PP_3739	0.69	+0.5
4,267,471	-		PP_3739	0.69	+0.6
4,267,471	-		PP_3739	0.69	+0.4
4,267,471	-		PP_3739	0.69	+0.5
4,267,471	-		PP_3739	0.69	+1.0
4,267,471	-		PP_3739	0.69	+0.4
4,267,471	-		PP_3739	0.69	+0.0
4,267,502	+		PP_3739	0.72	-0.1
4,267,503	-		PP_3739	0.72	-0.9
4,267,503	-		PP_3739	0.72	+0.3
4,267,558	-		PP_3739	0.76	+0.8
4,267,631	+		PP_3739	0.82	+0.5
4,267,631	+		PP_3739	0.82	-0.4
4,267,721	+		PP_3739	0.89	-0.4
4,267,722	-		PP_3739	0.89	-0.1
4,267,725	-		PP_3739	0.89	-0.5
4,267,858	+				+0.1
4,267,858	+				-0.7
4,267,859	-				-0.4
4,267,859	-				-0.5
4,267,859	-				-0.3
4,267,859	-				-0.1
4,267,861	+				+0.2
4,267,861	+				+0.4
4,267,862	-				+0.4
4,267,862	-				-0.0
4,267,881	-				+0.7
4,267,881	-				-0.1
4,267,881	-				-0.4
4,267,922	+				-0.8
4,267,922	+				-0.4
4,267,923	-				-0.1
4,267,956	-				+0.3
4,267,956	-				-0.3
4,268,066	+				-0.2
4,268,067	-				+0.7
4,268,067	-				-2.1
4,268,177	-		PP_3740	0.16	+0.3
4,268,189	+		PP_3740	0.17	-0.4
4,268,189	+		PP_3740	0.17	-0.8
4,268,190	-		PP_3740	0.17	-1.0
4,268,190	-		PP_3740	0.17	+0.4
4,268,190	-		PP_3740	0.17	+0.8
4,268,210	+		PP_3740	0.19	-0.7
4,268,211	-		PP_3740	0.19	+0.5
4,268,211	-		PP_3740	0.19	-0.2
4,268,728	+		PP_3740	0.57	-0.3
4,268,728	+		PP_3740	0.57	+0.1
4,268,728	+		PP_3740	0.57	-0.8
4,268,729	-		PP_3740	0.57	+0.2
4,268,770	-		PP_3740	0.60	+0.4
4,268,774	-		PP_3740	0.61	+0.3