Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3713 and PP_3714 are separated by 43 nucleotides PP_3714 and PP_3715 are separated by 21 nucleotides
PP_3713: PP_3713 - Catechol 1,2-dioxygenase (EC 1.13.11.1) <small>(from data)</small>, at 4,235,837 to 4,236,772
_3713
PP_3714: PP_3714 - Muconolactone Delta-isomerase, at 4,236,816 to 4,237,106
_3714
PP_3715: PP_3715 - Muconate cycloisomerase 1, at 4,237,128 to 4,238,249
_3715
Position (kb) 4236
4237
4238 Strain fitness (log2 ratio) -1
0
1
2 at 4235.826 kb on + strand at 4235.826 kb on + strand at 4235.827 kb on - strand at 4235.827 kb on - strand at 4236.018 kb on + strand, within PP_3713 at 4236.039 kb on + strand, within PP_3713 at 4236.279 kb on + strand at 4236.279 kb on + strand, within PP_3713 at 4236.280 kb on - strand, within PP_3713 at 4236.286 kb on - strand, within PP_3713 at 4236.286 kb on - strand, within PP_3713 at 4236.444 kb on + strand, within PP_3713 at 4236.444 kb on + strand, within PP_3713 at 4236.444 kb on + strand, within PP_3713 at 4236.444 kb on + strand, within PP_3713 at 4236.444 kb on + strand, within PP_3713 at 4236.444 kb on + strand, within PP_3713 at 4236.445 kb on - strand, within PP_3713 at 4236.779 kb on + strand at 4236.779 kb on + strand at 4236.779 kb on + strand at 4236.780 kb on - strand at 4236.786 kb on + strand at 4236.786 kb on + strand at 4236.786 kb on + strand at 4236.787 kb on - strand at 4236.787 kb on - strand at 4236.787 kb on - strand at 4236.787 kb on - strand at 4236.804 kb on + strand at 4236.804 kb on + strand at 4236.804 kb on + strand at 4236.804 kb on + strand at 4236.804 kb on + strand at 4236.804 kb on + strand at 4236.805 kb on - strand at 4236.805 kb on - strand at 4236.805 kb on - strand at 4236.805 kb on - strand at 4236.880 kb on + strand, within PP_3714 at 4236.880 kb on + strand, within PP_3714 at 4236.880 kb on + strand, within PP_3714 at 4236.881 kb on - strand, within PP_3714 at 4236.881 kb on - strand, within PP_3714 at 4236.949 kb on + strand, within PP_3714 at 4236.949 kb on + strand, within PP_3714 at 4236.949 kb on + strand, within PP_3714 at 4236.950 kb on - strand, within PP_3714 at 4236.950 kb on - strand, within PP_3714 at 4237.110 kb on + strand at 4237.111 kb on - strand at 4237.111 kb on - strand at 4237.358 kb on - strand, within PP_3715 at 4237.609 kb on - strand, within PP_3715 at 4237.645 kb on + strand, within PP_3715 at 4237.646 kb on - strand, within PP_3715 at 4237.646 kb on - strand, within PP_3715 at 4238.068 kb on + strand, within PP_3715 at 4238.075 kb on - strand, within PP_3715
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-3-buten-1-ol 0.1 vol% (C) remove 4,235,826 + +0.1 4,235,826 + -0.4 4,235,827 - +0.3 4,235,827 - -1.1 4,236,018 + PP_3713 0.19 +0.3 4,236,039 + PP_3713 0.22 +0.6 4,236,279 + +0.1 4,236,279 + PP_3713 0.47 +0.1 4,236,280 - PP_3713 0.47 +0.3 4,236,286 - PP_3713 0.48 +0.1 4,236,286 - PP_3713 0.48 -0.0 4,236,444 + PP_3713 0.65 +0.4 4,236,444 + PP_3713 0.65 -0.4 4,236,444 + PP_3713 0.65 -0.0 4,236,444 + PP_3713 0.65 +0.5 4,236,444 + PP_3713 0.65 +0.3 4,236,444 + PP_3713 0.65 -0.0 4,236,445 - PP_3713 0.65 +0.1 4,236,779 + -1.6 4,236,779 + -0.0 4,236,779 + +0.5 4,236,780 - +0.3 4,236,786 + -0.6 4,236,786 + -0.7 4,236,786 + +0.2 4,236,787 - +1.1 4,236,787 - -0.9 4,236,787 - -0.1 4,236,787 - -1.5 4,236,804 + +1.1 4,236,804 + -0.0 4,236,804 + -0.2 4,236,804 + +0.2 4,236,804 + +2.1 4,236,804 + -1.1 4,236,805 - +0.7 4,236,805 - +1.7 4,236,805 - -1.0 4,236,805 - +0.5 4,236,880 + PP_3714 0.22 -0.3 4,236,880 + PP_3714 0.22 +0.1 4,236,880 + PP_3714 0.22 -0.2 4,236,881 - PP_3714 0.22 +0.1 4,236,881 - PP_3714 0.22 -0.0 4,236,949 + PP_3714 0.46 -0.4 4,236,949 + PP_3714 0.46 -0.0 4,236,949 + PP_3714 0.46 -0.1 4,236,950 - PP_3714 0.46 -0.1 4,236,950 - PP_3714 0.46 +0.0 4,237,110 + +1.5 4,237,111 - +0.3 4,237,111 - +0.3 4,237,358 - PP_3715 0.20 +0.6 4,237,609 - PP_3715 0.43 +0.2 4,237,645 + PP_3715 0.46 +0.4 4,237,646 - PP_3715 0.46 +2.1 4,237,646 - PP_3715 0.46 -0.3 4,238,068 + PP_3715 0.84 -0.5 4,238,075 - PP_3715 0.84 -0.2
Or see this region's nucleotide sequence