Strain Fitness in Pseudomonas putida KT2440 around PP_3698

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
4,216,806	+		PP_3697	0.89	+0.2
4,216,806	+		PP_3697	0.89	+0.0
4,216,807	-		PP_3697	0.89	+0.4
4,216,807	-		PP_3697	0.89	+0.5
4,216,810	+		PP_3697	0.89	+0.9
4,216,811	-		PP_3697	0.89	-0.0
4,216,811	-		PP_3697	0.89	+1.9
4,216,862	-				+0.2
4,216,862	-				+0.8
4,216,956	+				+0.2
4,216,956	+				-0.5
4,216,956	+				+0.3
4,216,956	+				+0.5
4,216,956	+				-0.5
4,216,957	-				+0.8
4,216,957	-				+0.3
4,216,957	-				-0.0
4,216,959	-				-0.7
4,216,971	+				-0.2
4,216,972	-				-1.0
4,216,981	+				+0.9
4,216,996	+				+0.1
4,216,996	+				-0.0
4,216,996	+				+1.2
4,216,997	-				+0.3
4,216,997	-				-0.4
4,216,997	-				+1.1
4,216,997	-				-0.4
4,217,020	+				-0.5
4,217,020	+				-0.0
4,217,021	-				+0.7
4,217,021	-				+0.3
4,217,021	-				+0.8
4,217,174	+		PP_5622	0.18	-0.4
4,217,175	-		PP_5622	0.18	-0.4
4,217,175	-		PP_5622	0.18	-0.0
4,217,175	-		PP_5622	0.18	+1.4
4,217,175	-		PP_5622	0.18	+0.4
4,217,191	+		PP_5622	0.20	+0.7
4,217,191	+		PP_5622	0.20	-0.5
4,217,191	+		PP_5622	0.20	+0.0
4,217,191	+		PP_5622	0.20	-0.1
4,217,192	-		PP_5622	0.20	-0.7
4,217,192	-				+0.3
4,217,192	-		PP_5622	0.20	+1.1
4,217,192	-		PP_5622	0.20	-0.2
4,217,192	-		PP_5622	0.20	-0.5
4,217,194	+		PP_5622	0.21	+0.1
4,217,194	+		PP_5622	0.21	+0.6
4,217,195	-		PP_5622	0.21	+0.0
4,217,195	-		PP_5622	0.21	+0.6
4,217,195	-		PP_5622	0.21	+1.0
4,217,195	-		PP_5622	0.21	-0.0
4,217,195	-		PP_5622	0.21	+0.7
4,217,195	-		PP_5622	0.21	+0.2
4,217,198	+		PP_5622	0.21	+0.1
4,217,198	+		PP_5622	0.21	+0.4
4,217,199	-		PP_5622	0.21	-0.2
4,217,199	-		PP_5622	0.21	+0.9
4,217,199	-		PP_5622	0.21	+0.8
4,217,199	-		PP_5622	0.21	-0.1
4,217,199	-		PP_5622	0.21	+0.2
4,217,289	+		PP_5622	0.33	+0.1
4,217,290	-		PP_5622	0.33	+0.7
4,217,290	-		PP_5622	0.33	+0.3
4,217,290	-		PP_5622	0.33	-0.1
4,217,293	+		PP_5622	0.34	+0.2
4,217,293	+		PP_5622	0.34	+0.1
4,217,293	+		PP_5622	0.34	+0.6
4,217,293	+		PP_5622	0.34	+1.1
4,217,293	+		PP_5622	0.34	+0.7
4,217,293	+		PP_5622	0.34	+0.2
4,217,293	+		PP_5622	0.34	+0.9
4,217,293	+		PP_5622	0.34	-0.2
4,217,294	-		PP_5622	0.34	-0.3
4,217,294	-		PP_5622	0.34	-0.8
4,217,294	-		PP_5622	0.34	+0.6
4,217,294	-		PP_5622	0.34	+0.8
4,217,294	-		PP_5622	0.34	+0.1
4,217,294	-		PP_5622	0.34	+0.5
4,217,294	-		PP_5622	0.34	+0.1
4,217,294	-		PP_5622	0.34	+0.2
4,217,306	+		PP_5622	0.35	-0.2
4,217,307	-		PP_5622	0.35	+0.6
4,217,307	-		PP_5622	0.35	-0.5
4,217,307	-		PP_5622	0.35	-0.0
4,217,318	+		PP_5622	0.37	-0.2
4,217,318	+		PP_5622	0.37	+0.1
4,217,318	+		PP_5622	0.37	+0.3
4,217,319	-		PP_5622	0.37	-0.8
4,217,319	-		PP_5622	0.37	+0.7
4,217,422	+		PP_5622	0.51	+0.1
4,217,422	+		PP_5622	0.51	+0.2
4,217,422	+		PP_5622	0.51	-0.1
4,217,422	+		PP_5622	0.51	+1.7
4,217,422	+		PP_5622	0.51	+0.6
4,217,422	+		PP_5622	0.51	-0.2
4,217,422	+		PP_5622	0.51	-0.2
4,217,422	+		PP_5622	0.51	+0.0
4,217,422	+		PP_5622	0.51	-0.0
4,217,422	+		PP_5622	0.51	+0.5
4,217,422	+		PP_5622	0.51	-0.0
4,217,423	-		PP_5622	0.51	+0.8
4,217,423	-		PP_5622	0.51	+0.4
4,217,423	-		PP_5622	0.51	-0.2
4,217,423	-		PP_5622	0.51	-0.1
4,217,423	-		PP_5622	0.51	+0.2
4,217,423	-		PP_5622	0.51	+0.9
4,217,513	+		PP_5622	0.63	+0.9
4,217,552	+		PP_5622	0.68	+0.3
4,217,552	+		PP_5622	0.68	-1.2
4,217,552	+		PP_5622	0.68	-0.7
4,217,553	-		PP_5622	0.68	+0.1
4,217,553	-		PP_5622	0.68	-0.1
4,217,583	+		PP_5622	0.72	-0.0
4,217,583	+		PP_5622	0.72	+1.4
4,217,584	-		PP_5622	0.72	+0.6
4,217,625	+		PP_5622	0.78	+0.9
4,217,660	-		PP_5622	0.82	+0.0
4,217,856	+				-0.1
4,217,917	+				-0.5
4,217,917	+				+0.4
4,217,918	-				+0.6
4,217,918	-				+0.9
4,217,918	-				+0.1
4,217,918	-				+0.4
4,217,918	-				+0.1
4,217,987	-		PP_3698	0.13	+1.4
4,218,115	+		PP_3698	0.21	+1.2
4,218,115	+		PP_3698	0.21	+0.4
4,218,115	+		PP_3698	0.21	+0.6
4,218,115	+		PP_3698	0.21	-0.0
4,218,115	+		PP_3698	0.21	-0.3
4,218,116	-		PP_3698	0.21	+1.2
4,218,216	+		PP_3698	0.28	+1.1
4,218,217	-		PP_3698	0.28	-0.5
4,218,217	-		PP_3698	0.28	+0.5
4,218,278	-		PP_3698	0.32	+0.2
4,218,388	+		PP_3698	0.39	+0.2
4,218,389	-		PP_3698	0.39	+1.2
4,218,389	-		PP_3698	0.39	-0.1
4,218,389	-		PP_3698	0.39	-0.8
4,218,392	-		PP_3698	0.40	+0.6
4,218,449	+		PP_3698	0.43	+0.3
4,218,449	+		PP_3698	0.43	-0.3
4,218,450	-		PP_3698	0.44	+0.9
4,218,512	-		PP_3698	0.48	-1.0
4,218,523	+		PP_3698	0.48	+0.4
4,218,523	+				+2.7
4,218,523	+		PP_3698	0.48	+0.3
4,218,524	-		PP_3698	0.48	+0.8
4,218,645	+		PP_3698	0.57	+0.5
4,218,675	+		PP_3698	0.59	-0.9
4,218,731	+		PP_3698	0.62	-0.6
4,218,731	+		PP_3698	0.62	+0.2
4,218,732	-		PP_3698	0.62	+0.8
4,218,732	-		PP_3698	0.62	+0.7
4,218,732	-		PP_3698	0.62	+0.1
4,218,778	+		PP_3698	0.65	+0.5
4,218,779	-		PP_3698	0.65	+0.3
4,218,779	-		PP_3698	0.65	-0.6
4,218,779	-		PP_3698	0.65	+0.8
4,218,779	-		PP_3698	0.65	-0.5
4,218,993	-		PP_3698	0.80	+0.2
4,218,993	-		PP_3698	0.80	+0.1
4,219,042	+		PP_3698	0.83	-0.5
4,219,042	+		PP_3698	0.83	+0.0
4,219,042	+		PP_3698	0.83	+0.4
4,219,042	+		PP_3698	0.83	-0.5
4,219,063	+		PP_3698	0.84	-0.2
4,219,064	-		PP_3698	0.84	-0.1
4,219,136	-		PP_3698	0.89	+1.0
4,219,136	-		PP_3698	0.89	+1.2
4,219,211	+				+1.4
4,219,211	+				+0.2
4,219,212	-				-0.5
4,219,212	-				-0.3
4,219,212	-				-0.2
4,219,212	-				-0.2
4,219,228	+				-0.3
4,219,257	+				-0.6
4,219,257	+				+0.1
4,219,257	+				-0.0
4,219,257	+				-0.4
4,219,258	-				-0.7
4,219,258	-				+0.3
4,219,258	-				+0.6
4,219,258	-				+0.1
4,219,262	+				-0.7
4,219,262	+				+0.2
4,219,263	-				-0.8
4,219,263	-				-0.0
4,219,263	-				+1.0
4,219,263	-				-0.0
4,219,280	-				+0.9
4,219,304	+				-0.5
4,219,305	-				+0.5
4,219,311	+				+1.0
4,219,350	+				-0.6
4,219,351	-				-0.0
4,219,351	-				-1.6
4,219,385	+				-0.2
4,219,420	+				+1.5
4,219,421	-				+0.9
4,219,421	-				+0.8
4,219,424	+				+1.1
4,219,424	+				+0.7
4,219,424	+				-1.5
4,219,424	+				-0.5
4,219,425	-				-0.0
4,219,425	-				+0.3
4,219,425	-				+0.5
4,219,440	+				-0.2
4,219,440	+				+0.2
4,219,441	-				+0.3
4,219,441	-				-0.1
4,219,441	-				-0.3
4,219,506	+				+0.6
4,219,506	+				+0.4
4,219,506	+				-0.8
4,219,506	+				+0.8
4,219,507	-				+0.2
4,219,507	-				+0.7
4,219,507	-				+1.7
4,219,507	-				-0.3
4,219,558	-				+0.1
4,219,558	-				+0.6
4,219,622	-		PP_3699	0.11	+0.6
4,219,645	-		PP_3699	0.12	+0.6
4,219,689	-		PP_3699	0.15	-0.0
4,219,808	-		PP_3699	0.22	-0.5
4,219,853	-		PP_3699	0.24	+0.5
4,219,878	+		PP_3699	0.26	-0.4
4,219,879	-		PP_3699	0.26	+1.3
4,219,896	-		PP_3699	0.27	+0.2
4,219,905	+		PP_3699	0.28	+0.6
4,219,961	+		PP_3699	0.31	+1.2
4,219,962	-		PP_3699	0.31	+0.9
4,219,962	-		PP_3699	0.31	+1.1
4,219,962	-		PP_3699	0.31	+0.5
4,220,254	+		PP_3699	0.48	+0.1
4,220,254	+		PP_3699	0.48	+0.3
4,220,254	+		PP_3699	0.48	+0.6
4,220,266	-		PP_3699	0.49	+0.5
4,220,269	+		PP_3699	0.49	+0.2