Strain Fitness in Pseudomonas putida KT2440 around PP_3582

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
4,063,517	-		PP_3581	0.61	+0.6
4,063,517	-		PP_3581	0.61	+0.7
4,063,606	+		PP_3581	0.65	-0.5
4,063,606	+		PP_3581	0.65	-0.7
4,063,607	-		PP_3581	0.65	+0.8
4,063,607	-		PP_3581	0.65	-0.2
4,063,607	-		PP_3581	0.65	-0.2
4,063,658	+		PP_3581	0.67	-0.4
4,063,683	-		PP_3581	0.69	-3.2
4,063,770	+		PP_3581	0.73	-0.1
4,063,770	+		PP_3581	0.73	-1.0
4,063,770	+		PP_3581	0.73	+0.2
4,063,770	+		PP_3581	0.73	+0.1
4,063,770	+		PP_3581	0.73	+1.1
4,063,771	-		PP_3581	0.73	-1.0
4,063,771	-				+0.3
4,063,829	+		PP_3581	0.76	+1.0
4,063,829	+		PP_3581	0.76	-1.1
4,063,829	+		PP_3581	0.76	+0.2
4,063,829	+		PP_3581	0.76	+0.1
4,063,829	+		PP_3581	0.76	+0.1
4,063,830	-		PP_3581	0.76	-0.6
4,063,830	-		PP_3581	0.76	+1.6
4,063,830	-		PP_3581	0.76	+0.8
4,063,833	+		PP_3581	0.76	-0.0
4,063,833	+		PP_3581	0.76	+0.1
4,063,834	-		PP_3581	0.76	-0.4
4,063,834	-		PP_3581	0.76	-0.4
4,063,971	+		PP_3581	0.82	-0.1
4,063,971	+		PP_3581	0.82	-0.2
4,063,972	-		PP_3581	0.82	+0.9
4,064,118	+		PP_3581	0.89	-0.7
4,064,271	+				-0.1
4,064,271	+				+0.2
4,064,271	+				+0.4
4,064,271	+				+0.9
4,064,272	-				+0.6
4,064,272	-				+0.1
4,064,272	-				-0.1
4,064,272	-				-0.1
4,064,322	+				+0.2
4,064,322	+				+2.1
4,064,323	-				-0.1
4,064,323	-				-0.3
4,064,323	-				-0.5
4,064,323	-				+0.4
4,064,326	+				+0.8
4,064,388	-				+0.2
4,064,621	-		PP_3582	0.10	-0.5
4,064,716	+		PP_3582	0.17	-0.9
4,064,779	+		PP_3582	0.21	-0.4
4,064,965	+		PP_3582	0.33	-0.5
4,064,966	-		PP_3582	0.33	-1.1
4,064,966	-		PP_3582	0.33	-1.2
4,064,966	-		PP_3582	0.33	-0.6
4,065,218	+		PP_3582	0.50	-0.3
4,065,295	+		PP_3582	0.55	-1.8
4,065,295	+		PP_3582	0.55	-0.6
4,065,355	+		PP_3582	0.59	-0.4
4,065,355	+		PP_3582	0.59	-1.4
4,065,356	-		PP_3582	0.59	-0.3
4,065,356	-		PP_3582	0.59	-0.9
4,065,356	-		PP_3582	0.59	-0.9
4,065,502	+		PP_3582	0.69	-0.6
4,065,502	+		PP_3582	0.69	-0.8
4,065,502	+		PP_3582	0.69	+0.1
4,065,527	+		PP_3582	0.71	-1.4
4,065,527	+		PP_3582	0.71	-2.3
4,066,032	+				-1.2
4,066,033	-				-1.9
4,066,038	+				-0.5
4,066,039	-				-0.9
4,066,054	+				-1.3
4,066,055	-				-0.7
4,066,055	-				-1.1
4,066,055	-				-2.2
4,066,056	+				-1.2
4,066,056	+				-0.3
4,066,057	-				-0.4
4,066,365	+		PP_3583	0.13	-2.0
4,066,410	-		PP_3583	0.15	-2.0
4,066,410	-		PP_3583	0.15	-0.6
4,066,410	-		PP_3583	0.15	-1.6
4,066,431	+		PP_3583	0.15	-1.0
4,066,431	+		PP_3583	0.15	-1.1
4,066,432	-		PP_3583	0.15	+0.2
4,066,441	-		PP_3583	0.16	-3.1
4,066,461	+		PP_3583	0.16	-1.3
4,066,461	+		PP_3583	0.16	-0.8
4,066,461	+		PP_3583	0.16	-0.2
4,066,462	-		PP_3583	0.16	-1.4
4,066,617	+		PP_3583	0.21	-0.6
4,066,617	+		PP_3583	0.21	-1.3
4,066,618	-		PP_3583	0.21	-1.2
4,066,701	+		PP_3583	0.24	-0.2
4,066,785	+		PP_3583	0.27	-0.9
4,066,786	-		PP_3583	0.27	-1.9
4,066,833	+		PP_3583	0.28	-0.4
4,066,833	+		PP_3583	0.28	-1.0
4,066,833	+		PP_3583	0.28	-1.0
4,066,833	+		PP_3583	0.28	-2.3
4,066,833	+		PP_3583	0.28	-1.7
4,066,833	+		PP_3583	0.28	-1.0
4,066,833	+		PP_3583	0.28	-0.1
4,066,834	-		PP_3583	0.28	-1.3
4,066,834	-		PP_3583	0.28	-2.3
4,066,874	+		PP_3583	0.30	-0.3